prot_H-elongata_contig141388.2872.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141388.2872.1
Unique Nameprot_H-elongata_contig141388.2872.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length217
Homology
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.850e-26
Identity = 108/229 (47.16%), Postives = 138/229 (60.26%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCG-RQSVALSTTARFVLCSLSAVEFVGNSASEGSLLTWLKSR-------------GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 215
            +SGG A+ GGA+ +  A VTLN+C FDGNIA  G+GGAVWV GG                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX L+CG  ++  L + +    CSL+ V F  N+AS  ++L +                 GG A F++  VNIT+SVFE N+A   GGA++GGTD+ + +DG   + N       A+AAS+ T+ GNT   +N A  SGGGV
Sbjct:  117 LSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLFCGGSENATLLSASDNASCSLNGVIFAFNNASSETILDYDNMAAPSTQAPLITLYGGGGAAFYHTVVNITDSVFESNYAQLSGGALFGGTDSAMAIDGVTLENNFTPGFAGALAASTATLGGNTLFMNNSAMQSGGGV 345          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.350e-25
Identity = 103/223 (46.19%), Postives = 136/223 (60.99%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLLT----WLKSR----GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 215
            +SGG+A+ GGA+ +  A+VTL+ CVF+GN+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG              CSLS   F+ N+AS  + +     W+ +     GGAA FW AEVNI++SVF  N+A   GGAV+GG  T++ ++GC F+ N+   +GAA+AA S T+ G+T L++N AE++G GV
Sbjct:  155 LSGGSAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYWVSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACSATLGGSTTLTNNSAEENGAGV 377          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.340e-23
Identity = 108/225 (48.00%), Postives = 134/225 (59.56%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGR--QSVALSTTARFVLCSLSAVEFVGNSASEGSLLT-------WLKSRGGAAT-FWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 215
            +SGG+A+ GGA+ +  A V LN+CVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG    S  LS  A    CSLS   F  N+AS  ++L        W+   GG     + A V+IT+S F+ N+A   GGA+YGGTD  I +DGC+F+ N    HGAA+AASS T+ G+T L++N+A  +GGGV
Sbjct:  116 LSGGSAASGGAIHSSMATVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGGVNSTLLSAGAT-AFCSLSDATFEFNNASSETILDYDAITEPWVNLYGGGGVAVYRAVVDITDSEFQGNYAQLSGGALYGGTDAAIAIDGCWFENNFTPGHGAAVAASSATLGGSTVLTNNLATQNGGGV 339          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.520e-19
Identity = 100/231 (43.29%), Postives = 127/231 (54.98%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARF-------VLCSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGVS 216
            +SGG+A+ GGAV A  A+V LN+CVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXX  X LYCG    + + T            CSLS   F  N+AS  +++        W+   GG AA F+   V+IT S F  N+A   GGAVYGG+D+ + +DG  F+ N+   +G  +AASS  + G+T L +N A  +G GVS
Sbjct:  129 LSGGSAASGGAVYASAASVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSTTMTXXXXXXXXXXATCSLSGAVFGANNASSETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGVS 359          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.220e-18
Identity = 100/229 (43.67%), Postives = 124/229 (54.15%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVL------CSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 215
            +SGG+A+ GGAV A  A+V LNNCVFDGN A AG                           XXXXXXXXXXXXXXXXXXXXXXXXX  X LYCG    +               CSLS   F  N+AS  +++        W+   GG AA F+   V+IT S F  N+A   GGAVYGGTD+ + +DG  F+ N+   +G  +AASS  + G+T L +N A  +G GV
Sbjct:  129 LSGGSAASGGAVYASAASVALNNCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSXXXXXXXXXXXXXXTCSLSGAVFGANNASSETIVDYDLIEAPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGTDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGV 357          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.870e-14
Identity = 94/222 (42.34%), Postives = 121/222 (54.50%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLL-------TWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGG 214
            +SGGNA+ GGA+ +  A+VTL+ CVF+GN+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC    V  S  +    CSLS   F  N AS G+ +       TW    GG AA F+ A V IT+S+FE N+A   GG ++GG+ + + +DGC    N+   +G                +SNVA+++GGG
Sbjct:  126 LSGGNAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSG-GVESSDPS----CSLSDAAFTSNEASTGAEVSLSDTVETWADLYGGGAAAFYLATVEITDSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNTTPGYGXXXXXXXXXXXXXXXXTSNVADETGGG 342          
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.970e-11
Identity = 93/225 (41.33%), Postives = 117/225 (52.00%), Query Frame = 0
Query:    1 MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYC--GRQSVALSTTARFVLCSLSAVEFVGNSASEGS-------LLTWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 215
            +SGG+A+ GGA+ +  A+VTL+ C+F  N+A AG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC  G +S A S       CSLS   F  N A+ G+       + TW    GG AA F+ A V ITNS+FE N+A   GG ++GG+ + + +DGC    N                        NVA++SGGGV
Sbjct:  126 LSGGSAASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPS-------CSLSDATFTSNVATTGAEVSFSDTIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNXXXXXXXXXXXXXXXXXXXXXXXXNVADESGGGV 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRH4_ECTSI2.850e-2647.16Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH0_ECTSI3.350e-2546.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH3_ECTSI1.340e-2348.00Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JB86_9PHAE8.520e-1943.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI5.220e-1843.67Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH2_ECTSI4.870e-1442.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS31_9PHAE2.970e-1141.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 53..68
e-value: 5.1E-4
score: 17.8
coord: 76..94
e-value: 8.1E-5
score: 20.3
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 77..93
e-value: 0.0059
score: 17.0
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 10..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141388contigH-elongata_contig141388:566..1216 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141388.2872.1mRNA_H-elongata_contig141388.2872.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141388 566..1225 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141388.2872.1 ID=prot_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITG
GYFFNNSASESGGAVYALDAGLIIQQEVLFENNTAAEGGALYCGRQSVAL
STTARFVLCSLSAVEFVGNSASEGSLLTWLKSRGGAATFWNAEVNITNSV
FERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGN
TELSSNVAEDSGGGVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence