prot_H-elongata_contig141326.2868.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141326.2868.1
Unique Nameprot_H-elongata_contig141326.2868.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length108
Homology
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BLAST of mRNA_H-elongata_contig141326.2868.1 vs. uniprot
Match: A0A6H5K121_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K121_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-11
Identity = 45/108 (41.67%), Postives = 52/108 (48.15%), Query Frame = 0 
Query:    1 RTGPRRWSLLTPTVLWSVVILAMTPSFYGFGLVPPSGWSSLVTPPVPGNCAASFGRGSGGGAVAAAEPISGGGFQRWKWRGSPLGAASWLKKRVRDGKQMIVAQVCTV 108
            R GPRRW+LLTPTVLWSVVILAM PSFYGF  V                                              +GSP  AASWLK+RVRDGK+ +  QV ++
Sbjct:   11 RGGPRRWTLLTPTVLWSVVILAMMPSFYGF--VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVKGSPFAAASWLKERVRDGKRRVQMQVMSM 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141326.2868.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K121_9PHAE5.030e-1141.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..108
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141326contigH-elongata_contig141326:1014..1337 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141326.2868.1mRNA_H-elongata_contig141326.2868.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141326 1014..1337 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141326.2868.1 ID=prot_H-elongata_contig141326.2868.1|Name=mRNA_H-elongata_contig141326.2868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
RTGPRRWSLLTPTVLWSVVILAMTPSFYGFGLVPPSGWSSLVTPPVPGNC
AASFGRGSGGGAVAAAEPISGGGFQRWKWRGSPLGAASWLKKRVRDGKQM
IVAQVCTV
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