prot_H-elongata_contig141307.2862.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141307.2862.1
Unique Nameprot_H-elongata_contig141307.2862.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.920e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    9 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQ 48
            GHTVQFCRDQHGSRFIQQKLEVS++EDKEAFF EILPHTQ
Sbjct:  212 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILPHTQ 251          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    9 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQ 48
            GHTVQFCRDQHGSRFIQQKLEV+SE +K AFFEE++PH Q
Sbjct:    1 GHTVQFCRDQHGSRFIQQKLEVASEAEKAAFFEEVVPHAQ 40          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.320e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0
Query:    9 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILP 45
            GHTVQFCRDQHGSRFIQQKLEVS++EDKEAFF EILP
Sbjct:  507 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILP 543          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A251ULJ6_HELAN (Putative armadillo-type fold protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251ULJ6_HELAN)

HSP 1 Score: 64.3 bits (155), Expect = 9.260e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0
Query:    9 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 49
            GH V+FC DQHGSRFIQQKLEV S EDKE+ F+E+LP+  R
Sbjct:   67 GHIVEFCGDQHGSRFIQQKLEVCSNEDKESVFKEVLPNASR 107          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI001CB9D366 (pumilio homolog 5-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9D366)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 49
            R  +P   GH ++F  DQHGSRFIQQKLE+ S+E+KE+ F+E+LPH  R
Sbjct:  512 RLELPDIYGHIIEFSVDQHGSRFIQQKLEICSKEEKESVFKEVLPHASR 560          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI000B8C6EB0 (pumilio homolog 6, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C6EB0)

HSP 1 Score: 60.5 bits (145), Expect = 4.320e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPH 46
            R  +   AGH V+F  DQHGSRFIQQKLE+ S E+KE+ F+E+LPH
Sbjct:   45 RFELSDIAGHIVEFSADQHGSRFIQQKLEICSFEEKESVFKEVLPH 90          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI001FB15078 (pumilio homolog 6, chloroplastic-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB15078)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 49
            R  +   AGH VQF  DQHGSRFIQQKLE  S EDK + F+E+LPH  R
Sbjct:  616 RFELSDIAGHIVQFSADQHGSRFIQQKLENCSAEDKASVFKEVLPHASR 664          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: W1PYD1_AMBTC (PUM-HD domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PYD1_AMBTC)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-9
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILP 45
            R  +P   GH V+F  DQHGSRFIQQKLE  S E+KE+ F+E+LP
Sbjct:  668 RRELPEITGHIVEFSADQHGSRFIQQKLETCSPEEKESVFQEVLP 712          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A6P5WLT1_DURZI (pumilio homolog 5 isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5WLT1_DURZI)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    4 IPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 49
            +   +GH V+F  DQHGSRFIQQKLE  S EDKE+ F+E+LPH  R
Sbjct:  672 LSNISGHIVEFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASR 717          
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A2J6M9A8_LACSA (PUM-HD domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6M9A8_LACSA)

HSP 1 Score: 59.7 bits (143), Expect = 4.080e-9
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0
Query:    9 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPH 46
            GH V+FC DQHGSRFIQQKLE+ S E+KE+ F+E+LP+
Sbjct:  444 GHIVEFCGDQHGSRFIQQKLEICSVEEKESVFKEVLPN 481          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI1.920e-1692.50PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YYE4_9STRA2.650e-1482.50Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A6H5KS31_9PHAE5.320e-1491.89PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A251ULJ6_HELAN9.260e-1170.73Putative armadillo-type fold protein n=2 Tax=Helia... [more]
UPI001CB9D3661.790e-1057.14pumilio homolog 5-like n=1 Tax=Erigeron canadensis... [more]
UPI000B8C6EB04.320e-1060.87pumilio homolog 6, chloroplastic-like n=1 Tax=Cari... [more]
UPI001FB150781.170e-961.22pumilio homolog 6, chloroplastic-like isoform X1 n... [more]
W1PYD1_AMBTC1.600e-960.00PUM-HD domain-containing protein n=1 Tax=Amborella... [more]
A0A6P5WLT1_DURZI2.980e-960.87pumilio homolog 5 isoform X1 n=3 Tax=Durio zibethi... [more]
A0A2J6M9A8_LACSA4.080e-968.42PUM-HD domain-containing protein n=3 Tax=Lactuca T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 6..41
e-value: 1.3E-5
score: 34.6
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 8..37
e-value: 7.7E-8
score: 31.6
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 6..41
score: 10.134
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..49
e-value: 1.2E-12
score: 49.5
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 6..48
NoneNo IPR availablePANTHERPTHR12537:SF119PUMILIO HOMOLOG 6, CHLOROPLASTICcoord: 6..48
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..49
score: 12.089
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 8..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141307contigH-elongata_contig141307:12..161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141307.2862.1mRNA_H-elongata_contig141307.2862.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141307 12..161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141307.2862.1 ID=prot_H-elongata_contig141307.2862.1|Name=mRNA_H-elongata_contig141307.2862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold