prot_H-elongata_contig14102.2843.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14102.2843.1
Unique Nameprot_H-elongata_contig14102.2843.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
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BLAST of mRNA_H-elongata_contig14102.2843.1 vs. uniprot
Match: D8LF29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF29_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 8.600e-24
Identity = 69/157 (43.95%), Postives = 88/157 (56.05%), Query Frame = 0 
Query:    1 VHDDLLRKEGWGDLRPVVLELPSCGGCAGNLPRSTL---SAGLDPQPG----CCGA-ASAIAATVQEAG-----------PAFAQSGVSALVFAVNAGSPLPTRRFGEVVSAAEEHLRSHGRGSESDDTISSRRSRVLVAFCDGSSIIYYTVSSGLE 138
            +H DL+RK GW D+R  +L LP C  C  +         S  + P+PG    CCG  A  + ATV E             P    +  + +VFAVNAG  +PTRRF +VV+AAEE LR   R +E  D +  +R  VL AFCDGSSIIYYTVSSG++
Sbjct:   17 LHVDLVRKSGWTDVRSTLLHLPPCVCCRRDSSHGQPLQDSPRVPPEPGGNNRCCGKIAHGLVATVGEERNCNRDGDLGDVPVELPAASTTIVFAVNAGRTIPTRRFSDVVAAAEERLRIDFRATEGRDQL--QRPCVLAAFCDGSSIIYYTVSSGID 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14102.2843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF29_ECTSI8.600e-2443.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14102contigH-elongata_contig14102:6590..7837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14102.2843.1mRNA_H-elongata_contig14102.2843.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14102 6590..7868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14102.2843.1 ID=prot_H-elongata_contig14102.2843.1|Name=mRNA_H-elongata_contig14102.2843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
VHDDLLRKEGWGDLRPVVLELPSCGGCAGNLPRSTLSAGLDPQPGCCGAA
SAIAATVQEAGPAFAQSGVSALVFAVNAGSPLPTRRFGEVVSAAEEHLRS
HGRGSESDDTISSRRSRVLVAFCDGSSIIYYTVSSGLECHGSEGSALL*
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