prot_H-elongata_contig140709.2822.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig140709.2822.1
Unique Nameprot_H-elongata_contig140709.2822.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length86
Homology
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K7J2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.830e-21
Identity = 40/86 (46.51%), Postives = 63/86 (73.26%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V+++LPAGC D S + V+ +RA+YGL+++GRQW    +  +++  G EQ KADPCV+RK+VD  V +I+ ++VDD +V   D+
Sbjct:   27 DEEVFLRLPAGCGDKSHKVVMAERAIYGLKQSGRQWGYHAADTVVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDTLVAGSDE 111          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.760e-20
Identity = 37/84 (44.05%), Postives = 61/84 (72.62%), Query Frame = 0
Query:    2 EDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKD 85
            E++Y++ P GC  MSG+ V ++RA+YGL+++GR+W    +  L++  G EQ + DPCV+RKVVDGEV  ++ ++VDD++V   +
Sbjct:   57 EEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADE 139          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K2J9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.400e-20
Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S +    +R++YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:   27 DEEVFLKLPAGCGDKSHKIAKAERSIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 111          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 7.720e-20
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ +HVDD++V   D+
Sbjct:  430 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDE 514          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.430e-19
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S E    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  414 DEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 498          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.470e-19
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+++++LPAGC D S + V  +RAVYGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  293 DEEIFLRLPAGCGDKSHKVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE 377          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.350e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  160 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 244          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5KKQ0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.410e-19
Identity = 35/85 (41.18%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    2 EDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            ED+Y++LP GC   +G+AV ++RA+YGL+++GR+W    +  L+   G EQ + DPC++RKVVDGE+  ++ ++VDD++++  ++
Sbjct:   28 EDIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISN-GYEQCRVDPCIFRKVVDGELVGLIVINVDDIMLSATEE 111          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.990e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  451 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 535          
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 5.000e-19
Identity = 41/86 (47.67%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGMEQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK 86
            DE+V++KLPAGC D S +    +RA+YGL+++GRQW    +  L++  G EQ KADPCV+RK+VD  V +I+ ++VDD++V   D+
Sbjct:  521 DEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 605          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140709.2822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7J2_9PHAE3.830e-2146.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE2.760e-2044.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2J9_9PHAE3.400e-2046.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE7.720e-2048.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.430e-1948.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE2.470e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE4.350e-1947.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKQ0_9PHAE4.410e-1941.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE4.990e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JU90_9PHAE5.000e-1947.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..85
e-value: 3.6E-14
score: 53.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140709contigH-elongata_contig140709:1297..1554 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140709.2822.1mRNA_H-elongata_contig140709.2822.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig140709 1297..1554 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig140709.2822.1 ID=prot_H-elongata_contig140709.2822.1|Name=mRNA_H-elongata_contig140709.2822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DEDVYIKLPAGCEDMSGEAVLLQRAVYGLREAGRQWNLRLSRVLLQQIGM
EQSKADPCVYRKVVDGEVTLIVYVHVDDLVVTTKDK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2