prot_H-elongata_contig140512.2812.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig140512.2812.1
Unique Nameprot_H-elongata_contig140512.2812.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length51
Homology
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BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.560e-10
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 0 
Query:    3 MSTVCGFCGGLGCHTTINVQSGEAAPVMHSTCPYAPRKDS 42
            +STVCGFCGG+GC +TI+   GEA P++HSTCP APR D+
Sbjct: 1088 VSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDA 1127
[Close]
BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.800e-8
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:    2 QMSTVCGFCGGLGCHTTINVQSGEAAPVMHSTCPYAPRKDS 42
            ++ST CGFCGG+G  TTI+   G+A P++HSTCP APR D+
Sbjct:  410 KVSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDA 450
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140512.2812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE2.560e-1065.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE3.800e-858.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..50
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140512contigH-elongata_contig140512:1192..1344 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140512.2812.1mRNA_H-elongata_contig140512.2812.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig140512 1187..1623 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig140512.2812.1 ID=prot_H-elongata_contig140512.2812.1|Name=mRNA_H-elongata_contig140512.2812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MQMSTVCGFCGGLGCHTTINVQSGEAAPVMHSTCPYAPRKDSCVWLSTLA
*
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