prot_H-elongata_contig14033.2803.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig14033.2803.1
Unique Name	prot_H-elongata_contig14033.2803.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	929

Homology

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BLAST of mRNA_H-elongata_contig14033.2803.1 vs. uniprot
Match: D8LM26_ECTSI (PX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM26_ECTSI)

HSP 1 Score: 585 bits (1508), Expect = 1.320e-189
Identity = 445/1029 (43.25%), Postives = 533/1029 (51.80%), Query Frame = 0

Query:    1 SVVLSSLHAASHREGHGLPAEIGLLSWVAFFGNALLVLLQLAKPELDDTESVYVRVLDRGTVI----HAGTGWQAFWTGGDSGCNAFDADGPLILGRRGRDRGCFGCLLRWCCSCFGWTTARDGDEALEGGGEAWPIVGVEAGASVGSLNESLLGSVGLENSLRSGVSASKTKRGRSWTARRNRADGPRTGRCFGRINRRMSSMFDGTDKAMRESRD------------GLSEAGFQQYYFQSNLAG----ASPLAVGRGTTPGLHQSHERLFVSPSYS--VPFASRPPPQAAVPVFGVSVTRWRLVDTERLSTVYGSPS-DVVSIDRG------------------------PTELLGKVSS------SSHKPDALSTDPAGVDSCSGASKDDEAKSPAAAMTLQLELAVRSSGRGEMDWWGCDSGSEPTATSGRGFATVARGGGSGRSALASTASDWRVWRSAAEVLALYDALALRFGSEFFGRVPRPQLRTVTKIAIAPPPSGDVDDKGSRSASAMSS--TPIA-----ASPHRADFQRDARTVGAFLRGLLGLRQFLSTAVMDFLRPPPWVSLEVPRVMLTGREGDEDEDVDGKSWDGSDSGSLDFEENRAPQEENNAAGGGASLNF---------FPSCKAES----SCTGEAVAGAALASDYGAWLKRLAVRMRRAAPAGDRFIRLRRISHAVTGDEVVQWLVASSGECRGDRASAVRLGQDMVSNRLLVPLCAGY--------GGSGDTSTSSSRERQQQRDLLRSFDDGVGWLFAYAGEALRDPFTPPPPTEVAVMKGSCLRVGVTKWIETSDDEGPHACFVVHVEVEVTREAWDIPRRYRDFTQLRKRLLRLGIDLSKATAARGGRSGGDGSRVGS-LEPDLPKKTWRANKFDKNHLDARRAALEAYMEAAVGAALATPHLAGYLLMRFLDPDEANLRLLCD--------RNPFA---SWSPLSRASEEEG--RGASGTSTSAEEAAE------GPSVTREAEQEEEDFQSLTDSLGGVG 928
            SVVLSSL  AS   GH LPAEIG LSW++FF NA+LV+LQL KPELDDTE VYVRV+ R  V+     A  GWQ FW GG    + FD     + G     +                          EGGG AWPI G   G   G+LNESLLG +GL++  R   S SK + G  W                                                   G S    Q   F+  L G    AS   V R +      +       PSYS       R PP+ A P+FGV+VTRWRLVD +     +GS S DV   DR                               + SS      + H   +L+ DP            ++       + +Q EL VR+SGRGEMDWWG    +EP++  G G   +    G   +   + A DWRVWRSAA+ LALYDALALRFG EF GRV RP+L+T T  + A   SG + D  S S    SS  +P A     A+PHR D  RDA+TVGAFLR LLGLRQFLSTAVMD+L  P   SL    +   G  G E          GSD GS  +                              F S KA+     S  G+AVAGAALASDYG WLKRLAVR+RRA PAG++F+RLR IS AVTG++VV+WL+     C GDRASAVRLGQDMVS+RLL P+CAGY        GG GD+S+      ++  +LLRSFDD VGWLFA+ G+ALRDPF PPPPT+VAVM  + + V VT W ETSDD+G H  FVVH  VE T+EAW+ PRRYR+FTQLRKRLLRLGID+  A                  L P LP+KTWRANKFDK HL+ RRAALEAY+ AAV  AL+ PHL+G+L+MRFLDPDE+NLR+L +        RNPFA   +  P S      G  RG           A+      G S+T E   E EDF  LTDSLGG G
Sbjct:  137 SVVLSSLRHASEVSGHHLPAEIGCLSWMSFFANAVLVVLQLFKPELDDTEGVYVRVVGREGVVPSASSANNGWQTFWAGGG---DTFDVAATAVSGDDRNTKXXXXXXXXX----XXXXXXXXXXXXFEGGG-AWPIAGGTNGRG-GTLNESLLGIIGLDDQDREFSSPSKPEAG--WNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGASWLQRQDSPFRRKLWGDGGFASATTVTRASAQSALSAXXXXXXPPSYSGAASIGVRAPPRVAAPIFGVAVTRWRLVDLDGEPLAHGSSSGDVAWTDRSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASSMVESRFNDHLDPSLALDP------------NDGARVGEPLGVQFELVVRASGRGEMDWWGRGDSAEPSSP-GAGHIGIHPPHGPAPATPGTGAGDWRVWRSAADTLALYDALALRFGQEFCGRVSRPKLKT-TLPSSAAGASGVLSDDRSGSPPRPSSPDSPPALIVASAAPHRVDMLRDAKTVGAFLRSLLGLRQFLSTAVMDYLAQPAPASLPADDLSANGGGGAEA---------GSDHGSDGYFXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFSSGKADGGSGPSAAGQAVAGAALASDYGTWLKRLAVRLRRATPAGEQFVRLRCISPAVTGEQVVRWLMREK-VCNGDRASAVRLGQDMVSHRLLAPVCAGYHRPEEEVTGGGGDSSSG-----KEPGELLRSFDDAVGWLFAFVGDALRDPFAPPPPTQVAVMSNTGVDVRVTSWTETSDDDGAHVSFVVHTRVEATQEAWESPRRYREFTQLRKRLLRLGIDIPAAXXXXXXXXXXXXXXXXXXLAPGLPRKTWRANKFDKEHLEKRRAALEAYLRAAVKEALSAPHLSGHLMMRFLDPDESNLRVLSEQRRQQQRSRNPFARAHNSPPCSPRGGTPGGRRGVXXXXXXXXXTADVGNESVGESLTEER-TEAEDFDFLTDSLGGFG 1124

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig14033.2803.1 vs. uniprot

BLAST of mRNA_H-elongata_contig14033.2803.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LM26_ECTSI	1.320e-189	43.25	PX domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 595..694 e-value: 4.6E-7 score: 31.6
IPR036871	PX domain superfamily	GENE3D	3.30.1520.10		coord: 722..865 e-value: 4.6E-13 score: 50.9
IPR036871	PX domain superfamily	SUPERFAMILY	64268	PX domain	coord: 727..861
IPR001683	Phox homologous domain	PFAM	PF00787	PX	coord: 741..842 e-value: 1.1E-10 score: 41.5
IPR001683	Phox homologous domain	PROSITE	PS50195	PX	coord: 726..864 score: 12.567
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..928
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..21
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 22..42
IPR000591	DEP domain	PROSITE	PS50186	DEP	coord: 600..695 score: 8.806
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 612..669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig14033	contig	H-elongata_contig14033:3005..8080 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig14033.2803.1	mRNA_H-elongata_contig14033.2803.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig14033 3005..8080 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig14033.2803.1 ID=prot_H-elongata_contig14033.2803.1|Name=mRNA_H-elongata_contig14033.2803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=929bp
SVVLSSLHAASHREGHGLPAEIGLLSWVAFFGNALLVLLQLAKPELDDTE
SVYVRVLDRGTVIHAGTGWQAFWTGGDSGCNAFDADGPLILGRRGRDRGC
FGCLLRWCCSCFGWTTARDGDEALEGGGEAWPIVGVEAGASVGSLNESLL
GSVGLENSLRSGVSASKTKRGRSWTARRNRADGPRTGRCFGRINRRMSSM
FDGTDKAMRESRDGLSEAGFQQYYFQSNLAGASPLAVGRGTTPGLHQSHE
RLFVSPSYSVPFASRPPPQAAVPVFGVSVTRWRLVDTERLSTVYGSPSDV
VSIDRGPTELLGKVSSSSHKPDALSTDPAGVDSCSGASKDDEAKSPAAAM
TLQLELAVRSSGRGEMDWWGCDSGSEPTATSGRGFATVARGGGSGRSALA
STASDWRVWRSAAEVLALYDALALRFGSEFFGRVPRPQLRTVTKIAIAPP
PSGDVDDKGSRSASAMSSTPIAASPHRADFQRDARTVGAFLRGLLGLRQF
LSTAVMDFLRPPPWVSLEVPRVMLTGREGDEDEDVDGKSWDGSDSGSLDF
EENRAPQEENNAAGGGASLNFFPSCKAESSCTGEAVAGAALASDYGAWLK
RLAVRMRRAAPAGDRFIRLRRISHAVTGDEVVQWLVASSGECRGDRASAV
RLGQDMVSNRLLVPLCAGYGGSGDTSTSSSRERQQQRDLLRSFDDGVGWL
FAYAGEALRDPFTPPPPTEVAVMKGSCLRVGVTKWIETSDDEGPHACFVV
HVEVEVTREAWDIPRRYRDFTQLRKRLLRLGIDLSKATAARGGRSGGDGS
RVGSLEPDLPKKTWRANKFDKNHLDARRAALEAYMEAAVGAALATPHLAG
YLLMRFLDPDEANLRLLCDRNPFASWSPLSRASEEEGRGASGTSTSAEEA
AEGPSVTREAEQEEEDFQSLTDSLGGVG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR036871	PX_dom_sf
IPR001683	Phox
IPR000591	DEP_dom
IPR036390	WH_DNA-bd_sf