prot_H-elongata_contig140291.2799.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig140291.2799.1
Unique Name	prot_H-elongata_contig140291.2799.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	207

Homology

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BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Match: D7FHB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB3_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.140e-83
Identity = 121/209 (57.89%), Postives = 147/209 (70.33%), Query Frame = 0

Query:    1 ETAVWWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILGSTAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYSFSLLMDVRPAWEKFFTEMTRVGQIGNRTRKFNFRDQESVAES--PPGMVKASTSGFMPAGWYLTLDEMEVNDSVIDNDSRGGDRALFGSNYRFIRGVILWRMVWVQGVEWPSPTP 207
            E   WWVYLVYL+TLAPWGIM+VHD ID  R+ ++DVRNRLL+ + L LGS      YV WAA+ G  TESATML+GV LN+WHW+RV RGWYS+ LL  +R  WEKFF  MT VG+      +    +  +V E+  P   V+         GW+ +L+EMEVNDSVIDNDS+GGDRALFG NY  +RGVILWRMVW+QGVE PSP+P
Sbjct:    9 ENGEWWVYLVYLTTLAPWGIMQVHDPIDEARRSIYDVRNRLLMGSFLTLGSAIVGFTYVGWAAKVGNNTESATMLVGVALNTWHWVRVSRGWYSYVLLTSMRDVWEKFFDNMTAVGRFEIVVGRVPRMEDVAVIENGGPSTPVEGGAPAIEHRGWHPSLEEMEVNDSVIDNDSQGGDRALFGGNYTLVRGVILWRMVWLQGVERPSPSP 217

[Close]

BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Match: A0A6H5JJT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.060e-38
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 0

Query:    5 WWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILGSTAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYS 94
            WWVY VYLSTL PWGIM+VHDAID  R+ + DVRNRL++ T L L S     WYV WAA  GE TESATML+GV LN WHW+RV RGWYS
Sbjct:   13 WWVYFVYLSTLTPWGIMQVHDAIDQERRAIRDVRNRLMLGTGLTLASAIVGFWYVAWAASVGEATESATMLVGVVLNFWHWVRVTRGWYS 102

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot

BLAST of mRNA_H-elongata_contig140291.2799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FHB3_ECTSI	1.140e-83	57.89	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JJT9_9PHAE	2.060e-38	67.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 41..60
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 72..89
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 61..71
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 90..207
None	No IPR available	TMHMM	TMhelix		coord: 41..63
None	No IPR available	TMHMM	TMhelix		coord: 4..21

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig140291	contig	H-elongata_contig140291:153..863 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig140291.2799.1	mRNA_H-elongata_contig140291.2799.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig140291 153..863 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig140291.2799.1 ID=prot_H-elongata_contig140291.2799.1|Name=mRNA_H-elongata_contig140291.2799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
ETAVWWVYLVYLSTLAPWGIMEVHDAIDATRKPVHDVRNRLLVSTLLILG
STAFAVWYVVWAARTGEVTESATMLMGVGLNSWHWIRVLRGWYSFSLLMD
VRPAWEKFFTEMTRVGQIGNRTRKFNFRDQESVAESPPGMVKASTSGFMP
AGWYLTLDEMEVNDSVIDNDSRGGDRALFGSNYRFIRGVILWRMVWVQGV
EWPSPTP