prot_H-elongata_contig14009.2792.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14009.2792.1
Unique Nameprot_H-elongata_contig14009.2792.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length720
Homology
BLAST of mRNA_H-elongata_contig14009.2792.1 vs. uniprot
Match: D8LF16_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF16_ECTSI)

HSP 1 Score: 491 bits (1263), Expect = 1.050e-150
Identity = 345/781 (44.17%), Postives = 420/781 (53.78%), Query Frame = 0
Query:    1 MMFVAGMMGIKRQSLGKLRSRREARVSATPAVVMDLPPSAMEDPTPFVPPSQYQVRLNVSRGLGLSLNITGNDVRVKGFSPVEDGEIGPAEACGKIQAIKKWRTKSLIVGDALVRVNHEQLTLLNHELAVSVLRRVVETGADQLVLMHFEYAENSSESAPGSSLP-------INPATRTRLYSSESLTASYERLSLQAKMVNVNRGDVFRSESWHADDSPTLASEMGGVGVDQGGSWSDTRRQTLVATAASQGLGLDARNVEVGGAVGRAGAFSEAIELKG------------RNKGLGRLWGESDAGIGSVGEGSGHVYLGDMGLAQAQRTLRNIAQDVQSPPPLPKELYRGRHRRRPRRRRYTLALRHPGMVSNHGEFGSRGGC---------GGIGGGPGATRRSIDLLVCHEVVRGELRQLESELERQTAMVARRNRWSSVRGMVGKIV--C------SSNQPVVPCRAPLSWLSPAAASPDIGNTSNTKKGGNASLRSRYVSAIDVADSDLSDFLSDGDPSSAFPGTNSGRGRRNVSGE--GVAKLLD---------------------EEMNAACDIFLEAVSTAGMENELLQTLALEVSHVGPPRPLPAAAYDLQTALESVQHFATQTLSGVVQVEAVRKT-AQEFFAGTLSLSPTSIPMGGGQRXXXXXXXXXXXXXXXXAGLREGWELWWPPRELTEALALVTARQMANAMRCDAEPLIQIWMRCFTPLEVRHRERLWGALAPSP-LDSEHVYQGRWHRQLVCGLVTLFAQV 720
            M+ V+GMMG+KRQ +G LRSRRE+R+      V +LP SAM+DP PFVPPSQY+VRLNVSRGLGLSLNITGNDVRVKGFS V+ G+IGPA+ACG IQ           VGDALVRVNHEQL LLNHE  V VLR ++ T   Q++L+ F YAE+S      ++         + P TR    S+     S  R+S       ++  + FRSESWH    P  A E  G G +   S S  RR T  A   SQ LG        G A  R G+ +EA   +G            R K  G LWGE + G+     GS H+YLGDMG A+ QRTL+ IA+DVQ PPPLP+ELYRGR                                         GG+          I+L+ C  VV+ E+ +LE ELERQ A +ARRNR SS R +V K++  C      S + P    R   S   PAA +       ++  GG  +      S   +      D     D  S      +      VSGE  GV +  D                          ACDIFLEAVSTAG+++ELL    +EV  V PPRPLPAAAYDLQTALESVQHFATQTL+GVVQ  AVR +   +     LS + +   + GG R                AGL E WE  WPPRELT AL LVTARQMA+AMRCD EPLIQIWMRCFTP++ +HR +LWG LAP P ++   +  GRWHRQLVCGL+TL+AQV
Sbjct:    1 MLLVSGMMGVKRQCMGTLRSRRESRIPTHLVTVTELPVSAMDDPNPFVPPSQYEVRLNVSRGLGLSLNITGNDVRVKGFSTVQGGDIGPAQACGDIQ-----------VGDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTXXXXXXXXXLPPKTRVPRPSTMENPRSEPRVS----HGGLDTEEAFRSESWHGSSKPPRAREGQGQGREMARSVSPHRR-TGPAVLRSQSLGEGGPPTVAGFA--RKGSGAEAGHKEGEWEGWTVDGMRPRGKRRGELWGEPELGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQPPPPLPRELYRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGV----------INLVSCQGVVQAEVSRLEGELERQRARLARRNRRSSARSLVAKMLHKCGPSALFSDDSPSPTARG--SGRGPAAGA--FSRRRSSLAGGTGASWREENSGGGLGRPSDGDLTDSSDDISGTVARRATAAAARVSGEASGVGQGEDGFSIDDXXXXXXXXXXXXXXXXXXXGACDIFLEAVSTAGLQDELLCNRDVEVLGVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVRGSDLYDNDYDPLSGARSPRHLAGGGRAGKGSAAKEAREGGVAAGLVEEWEAAWPPRELTAALGLVTARQMAHAMRCDTEPLIQIWMRCFTPVDAKHRTKLWGGLAPPPSVNDRFLEAGRWHRQLVCGLLTLYAQV 749          
BLAST of mRNA_H-elongata_contig14009.2792.1 vs. uniprot
Match: A0A6H5JMZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ7_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 5.260e-52
Identity = 112/181 (61.88%), Postives = 127/181 (70.17%), Query Frame = 0
Query:  544 LEVSHVGPPRPLPAAAYDLQTALESVQHFATQTLSGVVQVEAVRKTAQEFFAGTL-SLSPTSIP--MGGGQRXXXXXXXXXXXXXXXXAGLREGWELWWPPRELTEALALVTARQMANAMRCDAEPLIQIWMRCFTPLEVRHRERLWGALAPSP-LDSEHVYQGRWHRQLVCGLVTLFAQV 720
            L V  V PPRPLPAAAYDLQTALESVQHFATQTL+GVVQ  AVR    + +     SLS    P  + GG R                AGL EGWE  WPPRELT AL LVTARQMA+AMRCDAEPLIQIWMRCFTP++ +HR +LWG LAP+P ++   +  GRWHRQLVCGL+TL+AQV
Sbjct:   33 LPVLGVDPPRPLPAAAYDLQTALESVQHFATQTLAGVVQAAAVR--GSDLYDNDYDSLSGARSPRHLAGGGRAGKGSGAKEARDGGVAAGLVEGWEAAWPPRELTAALGLVTARQMAHAMRCDAEPLIQIWMRCFTPVDAKHRTKLWGGLAPAPSVNDPFLEAGRWHRQLVCGLLTLYAQV 211          
BLAST of mRNA_H-elongata_contig14009.2792.1 vs. uniprot
Match: A0A6H5JMH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.010e-40
Identity = 126/339 (37.17%), Postives = 163/339 (48.08%), Query Frame = 0
Query:    1 MMFVAGMMGIKRQSLGKLRSRREARVSATPAVVMDLPPSAMEDPTPFVPPSQYQVRLNVSRGLGLSLNITGNDVRVKGFSPVEDGEIGPAEACGKIQAIKKWRTKSLIVGDALVRVNHEQLTLLNHELAVSVLRRVVETGADQLVLMHFEYAENS-----SESAPGSSLPINPATRTRLYSSESLTASYERLSLQAKMVNVNRGDVFRSESWHADDSPTLASEMGGVGVDQGGSWSDTRRQTLVATAASQGLGLDARNVEVGGAVGRAGAFSEAIELKG------------RNKGLGRLWGESDAGIGSVGEGSGHVYLGDMGLAQAQRTLRNIAQDVQ 322
            M+ V+GMMG+KRQ LG LRSRRE+R+ A  A V +LP SAM+DP PFVPPSQY+V                                                      GDALVRVNHEQL LLNHE  V VLR ++ T   Q++L+ F YAE+S     + ++P     + P T     S+     S  R+S      +++  + FRSESWH    P  A +  G G +   S S  RR T  A   SQ LG        G  +   G+ +EA + +G            R K  G LWGE + G+     GS H+YLGDMG A+ QRTL+ IA+DVQ
Sbjct:    1 MLLVSGMMGVKRQCLGTLRSRRESRIPAHLATVTELPVSAMDDPNPFVPPSQYEV------------------------------------------------------GDALVRVNHEQLNLLNHENVVRVLRGLLRTTGSQVLLLRFAYAEDSPRLLRATTSPXXXXXLPPKTPGPRPSTMENPQSEPRVS----QSDLDTEEAFRSESWHGSRKPPRARKGQGQGREMARSVSPHRR-TGPALLRSQSLGEGGPPAVAG--LAHKGSGAEAGDKEGEREGWAVDGMRPRGKRRGVLWGEPEMGLAGGDGGSRHIYLGDMGHARVQRTLQAIAEDVQ 278          
BLAST of mRNA_H-elongata_contig14009.2792.1 vs. uniprot
Match: A0A835Z5M4_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5M4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.720e-12
Identity = 59/164 (35.98%), Postives = 80/164 (48.78%), Query Frame = 0
Query:    3 FVAGMMGIKRQSLGKLRSRREARVSATPAVVMDLPPSAMEDPTPFVPPSQYQVRLNVSRGLGLSLNITGNDVRVKGFSPVEDGEIGPAEACGKIQAIKKWRTKSLIVGDALVRVNHEQLTLLNHELAVSVLRRVVETGADQLVLMHFEYAENS-----SESAPG 161
            F  GM GIKR     + S               LP S+++DP+PFVPPSQY  RL+ S+GLG++L ITG  VRV GF+P  +G +  A+  G I            VGD L+ VN   LTL+     + VLR +     +  V + F Y +       +E  PG
Sbjct:   78 FAYGMYGIKRIRAASIGS---------------LPASSVDDPSPFVPPSQYIARLDASKGLGINLQITGVKVRVGGFAPAANGAMSAAQLSGIIS-----------VGDVLLGVNGRDLTLMRFNDILGVLRALPRI-KEGTVTLRFAYGQEEQLLLEAEQEPG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14009.2792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LF16_ECTSI1.050e-15044.17PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JMZ7_9PHAE5.260e-5261.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH3_9PHAE1.010e-4037.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5M4_9STRA1.720e-1235.98PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 387..407
NoneNo IPR availableGENE3D2.30.42.10coord: 48..159
e-value: 2.0E-5
score: 26.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 26..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..720
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14009contigH-elongata_contig14009:435..8104 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14009.2792.1mRNA_H-elongata_contig14009.2792.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14009 435..8104 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14009.2792.1 ID=prot_H-elongata_contig14009.2792.1|Name=mRNA_H-elongata_contig14009.2792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=720bp
MMFVAGMMGIKRQSLGKLRSRREARVSATPAVVMDLPPSAMEDPTPFVPP
SQYQVRLNVSRGLGLSLNITGNDVRVKGFSPVEDGEIGPAEACGKIQAIK
KWRTKSLIVGDALVRVNHEQLTLLNHELAVSVLRRVVETGADQLVLMHFE
YAENSSESAPGSSLPINPATRTRLYSSESLTASYERLSLQAKMVNVNRGD
VFRSESWHADDSPTLASEMGGVGVDQGGSWSDTRRQTLVATAASQGLGLD
ARNVEVGGAVGRAGAFSEAIELKGRNKGLGRLWGESDAGIGSVGEGSGHV
YLGDMGLAQAQRTLRNIAQDVQSPPPLPKELYRGRHRRRPRRRRYTLALR
HPGMVSNHGEFGSRGGCGGIGGGPGATRRSIDLLVCHEVVRGELRQLESE
LERQTAMVARRNRWSSVRGMVGKIVCSSNQPVVPCRAPLSWLSPAAASPD
IGNTSNTKKGGNASLRSRYVSAIDVADSDLSDFLSDGDPSSAFPGTNSGR
GRRNVSGEGVAKLLDEEMNAACDIFLEAVSTAGMENELLQTLALEVSHVG
PPRPLPAAAYDLQTALESVQHFATQTLSGVVQVEAVRKTAQEFFAGTLSL
SPTSIPMGGGQRGGQRAAKEAREAATAAAGLREGWELWWPPRELTEALAL
VTARQMANAMRCDAEPLIQIWMRCFTPLEVRHRERLWGALAPSPLDSEHV
YQGRWHRQLVCGLVTLFAQV
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