prot_H-elongata_contig14000.2788.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig14000.2788.1
Unique Nameprot_H-elongata_contig14000.2788.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length377
Homology
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 1.250e-95
Identity = 157/269 (58.36%), Postives = 193/269 (71.75%), Query Frame = 0
Query:    3 GYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTM---PPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPG-SAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPV-----TAAPVVPSNCSNGMPGYQDGFICCKEA 262
            G  D DVCCL  CGQCGG GCG+IAGT G+  CC  TI+E       + G      PC++A +TPSP+NPAF GT +P APSTCSNGIAG Q+GA CC E CG+CGG GCG++PGTGGS NCC ST+L   ++CG   EAPC+I+GYTPAPA V G + APY +S CSNG+ GYQD   CCA +CGQCGG GCGS+PGT G+S CCS+ +   G  C+ +  +PC+I +Y  TP+PV     +AAPVVPSNCSNG+PGYQ+  ICC E+
Sbjct:  298 GVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEE------SGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCG---EAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVIDNY--TPAPVVPDYGSAAPVVPSNCSNGLPGYQNNDICCLES 555          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 5.500e-44
Identity = 122/321 (38.01%), Postives = 165/321 (51.40%), Query Frame = 0
Query:    7 LDVCCLLDCGQCGGAGCGSIAGTPGSDA--CCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAA--CCAENCGQ-CGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCSNGVAGYQ--DANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMPGYQDGFICCKEAC-GLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTDAPCILDE---TESPTAAPT 316
            LDVCC L+CG CGG GC + A T    A  CC+T I ESG  C  ++  + PCI++             T +  A S C NG  GVQ+     CC   CG+ CGG GCG++PG   +S CCAS + ++ I+CG+G+EAPC       A             S CSNG  G +  DA VCC  +C  CGG  CG++ G  G+  CC+ +I +N   C+   +APC++      P  VTA     S C+NG+ G   G +CC E C G+           TNG+ DCC + I  + + CVD   APC++ E   T +P   PT
Sbjct:   37 LDVCCTLECGTCGGVGC-TPANTSSLTANDCCATEISESGVMC--SDTGVAPCILS-------------TEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVD-ASQCCASIIEQSGIVCGDGIEAPCTQVAVAVA------------DSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGAD-CCTGTIIANDELCSEKGSAPCVV-----DPPEVTA-----STCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVDT--APCVMVEGTFTPAPAVVPT 315          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 7.280e-42
Identity = 78/137 (56.93%), Postives = 94/137 (68.61%), Query Frame = 0
Query:  163 SNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIR--SNGTDCAISQAAPCIIADYVPTP-SPV---TAAPVVPSNCSNGMPGYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGV 293
            S CSNG+ G  D  VCC E+CGQCGGVGCG++ GT G+S CC  +I+  S G  C     APC++  + P+P +P    TAAPV PS CSNG+PGYQDG ICC E CG CGG GCG + GT GS +CCPSDI  +GV
Sbjct:    4 STCSNGIPGVSDGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCG---EAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDILAAGV 137          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.300e-40
Identity = 114/328 (34.76%), Postives = 142/328 (43.29%), Query Frame = 0
Query:    3 GYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVI---DGYTPAPAGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVP---------------TPSPVTAAPVVPSNCSNGMPGYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTDAPCILDETESPT 312
            G Q  DVCC   CG CGG GC    G  GS ACC   +R SG+ C        PC+                        C  GI G+Q    CC+ +C  CGG GC    G  G   CC   V  +   C    EAPC++   +  TPAP   P  AA      C  G+ G Q ++VCCA SCG CGG GC    G  G   CC   IR+   DC+++  APCI+    P               TP+P  AA      C  G+ G Q   +CC  +CG CGG GC    G  G  +CC  +I  + + C    +APCI+   E  T
Sbjct:  276 GIQTSDVCCSTSCGSCGGTGCSGRDG--GSGACCGGGVRASGRYCSVTGEA--PCMTVP--------------------KCDGGIVGIQASDVCCSLSCESCGGSGCSGRDG--GEDECCGGGVRASGRDCSVTGEAPCIVTSPEPSTPAPTPAPTRAA----GTCDGGIVGVQASDVCCALSCGSCGGDGCSDRDG--GEDNCCGVEIRTANLDCSVTGEAPCIVTSPEPSTXXXXXXXXXXXXXTPAPSRAA----GTCEGGIVGVQASNVCCALSCGSCGGDGCSDRDG--GEDNCCGVEIRTANLDCSVTGEAPCIVTSPEPST 565          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.400e-29
Identity = 68/132 (51.52%), Postives = 78/132 (59.09%), Query Frame = 0
Query:  241 VPSNCSNGMPGYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTDAPCILDETESPTAAPT--------PQKVGDANDFLNTTANAAVTRTPVPVGMLLPLVASTAALLGAWAFGGA 364
            VPS CSNG+PGYQDG  CC   CGLCGG GCG V GT G++DCCPS I  S   C     APCI+  T +PT AP         P   G+ANDF+N T  A       P  ++LPL  +TAA LGA AFG A
Sbjct:    3 VPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFINDTNAADPGMLREPASLVLPLATATAAFLGALAFGAA 134          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.520e-22
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 0
Query:    9 VCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENC-GQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCV-IDG-YTPAPAGVP 154
            +CC   CG CGG GCG++ G  G D CCS  I      C   N    PC++         P FV        STC NG+AGVQ+G+ CCAE C G CGG GCGS+ GT G+ +CC++T+L   + C  GV APC+ ++G YT AP   P
Sbjct:  191 ICCDAACGLCGGPGCGNVTGLTGLD-CCSEEIAVVNDLCSVTNEA--PCVMDP-------PDFVA-------STCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAP 322          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.080e-19
Identity = 73/192 (38.02%), Postives = 100/192 (52.08%), Query Frame = 0
Query:   71 FVGTTSPFAPSTCSNGIAGVQNGA--ACCAENCGQCGGVGCGSLPGTGGS---SNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCSNGVAGYQD--ANVCCAESCGQ-CGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMPGYQD 254
             VGT +P A + CSNG+ G+Q+ +  ACC E CG CGGVGC   P    S   ++CCA+ ++E+  +C   + APC+I            +AA    S C NG  G QD   +VCC   CG  CGG GCGSL G   +  CCS  I  +G  C+ + +APC++       S         + CSNG+ G +D
Sbjct:   19 LVGTMTP-AGAVCSNGLEGIQSTSLDACCVEECGLCGGVGC--TPANTSSLTSADCCATEIIESGTLCEVSMAAPCIIT-----------TAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQ-CCSNLIIESGAVCSDTVSAPCVVGAAEADNS---------TTCSNGIVGIED 186          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.310e-16
Identity = 87/317 (27.44%), Postives = 114/317 (35.96%), Query Frame = 0
Query:    1 MSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWNNGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCS------------NGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCII-------------------------------------ADYVPTPSPVTAAPVVPSNCSNGMPGYQDGFICCKEACGLCGG 268
            +SG +   VCC ++CG CGG GCGS  G    D CC++TI+E    C        PC+I E T               A  TCSNG+A    G  CC+  CG CGG GC    G  G   CC S +   N  C +   APCV+ G +                                   G      CC   CG CGG GCG + G G    CC++    +   C+++  +PC++                                       Y  T +  T+   V    +    G   G  CC   CG CGG
Sbjct:   28 LSGLEKGGVCCPVECGTCGGTGCGSRPGLTKYD-CCTSTIKEDNHLCSVTKEA--PCVIDEETE--------------ADPTCSNGVA---KGDICCSAGCGYCGGTGCAGRGGLSGDE-CCTSKIAAANKSCDD-QSAPCVMSGNSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCGGVAKGAYCCNAGCGTCGGTGCG-MRGDG----CCTSDAALS--LCSVTGMSPCLMDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTTTTTDTTSGTSVADATATSCDGVSKGAYCCNAGCGTCGG 315          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: A0A7R9YY20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY20_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.510e-15
Identity = 58/147 (39.46%), Postives = 75/147 (51.02%), Query Frame = 0
Query:   81 STCSNGIAGVQNGAA--CCAENCGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAPAGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGSSFCCSTSIRSNGTDCAISQAAPCII 225
            S C NGI GV +     CCA +CGQCGG GC   PG  GS+NCC   +  ++I+C    +  C++    PA            +  C  GV      ++CCA SCG CGG GCGS PG  G S CC + + S+G  C+      CII
Sbjct:  251 SFCYNGIEGVSSSGVEVCCASSCGQCGGSGCWQFPG--GSANCCTGAIASSDIVCSEFTDVGCIM----PA------------TQWCEYGVI---SGDICCAGSCGTCGGTGCGSRPG--GWSSCCGSGVTSSGNVCSDYSDIACII 374          
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-14
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   78 FAPSTCSNGIAGVQNGAACCAENC-GQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCV-IDG-YTPAPAGVP 154
            F  STC NGIAGVQ+G+ CCAE C G CGG GCGS+ GT G+ +CC+ST+L   + C  GV APC+ ++G YT AP   P
Sbjct:    6 FVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAP 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14000.2788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FZM1_ECTSI1.250e-9558.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG71_ECTSI5.500e-4438.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JSA0_9PHAE7.280e-4256.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U7_ECTSI1.300e-4034.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM0_ECTSI1.400e-2951.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE1.520e-2244.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LML5_ECTSI1.080e-1938.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNF5_9PHAE2.310e-1627.44MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7R9YY20_9STRA1.510e-1539.46Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
D8LML4_ECTSI1.390e-1456.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..343
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 344..368
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 369..376
NoneNo IPR availableTMHMMTMhelixcoord: 349..371

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14000contigH-elongata_contig14000:2181..6012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14000.2788.1mRNA_H-elongata_contig14000.2788.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig14000 1516..7353 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig14000.2788.1 ID=prot_H-elongata_contig14000.2788.1|Name=mRNA_H-elongata_contig14000.2788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=377bp
MSGYQDLDVCCLLDCGQCGGAGCGSIAGTPGSDACCSTTIRESGQTCDWN
NGTMPPCIIAEWTPSPVNPAFVGTTSPFAPSTCSNGIAGVQNGAACCAEN
CGQCGGVGCGSLPGTGGSSNCCASTVLENNIICGNGVEAPCVIDGYTPAP
AGVPGSAAPYVSSNCSNGVAGYQDANVCCAESCGQCGGVGCGSLPGTGGS
SFCCSTSIRSNGTDCAISQAAPCIIADYVPTPSPVTAAPVVPSNCSNGMP
GYQDGFICCKEACGLCGGVGCGRVAGTNGSTDCCPSDIEKSGVYCVDVTD
APCILDETESPTAAPTPQKVGDANDFLNTTANAAVTRTPVPVGMLLPLVA
STAALLGAWAFGGALFSLSGFGTVRF*
back to top