prot_H-elongata_contig13959.2754.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13959.2754.1
Unique Nameprot_H-elongata_contig13959.2754.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length394
Homology
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BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Match: D8LHB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB7_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.780e-51
Identity = 193/314 (61.46%), Postives = 223/314 (71.02%), Query Frame = 0 
Query:   84 RGGFVPVGEDFFVGGGTSGPVAYIPSS-SNAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGRGAAPWVVGKEVDVGEVEDDGDDIFGVGSGLQSKSGDKRHGDIFSLMGMPGAGGHRSKSSRLPGMRKKEDLTEEEDSSFFFVQLPTKLPRPLRQFQREIPKDDASASGVGTGADQAL-TPAPYHAVKKEVG-AAVGXXXXXXXXXXXXXKXXAKAEQAVPPPEELSFDQGLLRMRPGKIGKLYVHQSGRARLVVGGVSFVVHPGLPVSFVEEGVSINAKKSSFCSFGQASGR 394
            RGGFVPVG+DFFVGGG SGP AY+P+  +     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          ++FGVG  + SK G  + GD+ +L+G     G RS+SS+LPGMR + +LTEEEDSS FFVQLPTKLPRPL   QR   KD ASA   G G      T  P  AVK+E G +  GXXXXXXXXXXXXX X  KA +     ++++FD+GL RMRPGKIGKLYVHQSG+ARLV+GGVS VVHPGLPVSFVE+GVSI+AK+ +FCSFGQ + R
Sbjct:  163 RGGFVPVGQDFFVGGGGSGPAAYMPAGVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMFGVGESV-SKGGGGKGGDVLTLIGSDV--GRRSRSSKLPGMRNQAELTEEEDSSLFFVQLPTKLPRPLAACQRG--KDGASAPVRGKGKXXXXATGGP--AVKEEAGESGAGXXXXXXXXXXXXXXXAEKASEIAA--DDVAFDRGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKR 467
[Close]
BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Match: A0A6H5JXQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ5_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.310e-50
Identity = 194/346 (56.07%), Postives = 225/346 (65.03%), Query Frame = 0 
Query:   85 GGFVPVGEDFFVGGGTSGPVAYIPSSSNAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSGRGAAPWVVGKEVDVGEVEDDG-DDIFGVGSGLQSKSGDKRHGDIFSLMGMPGAGGHRSKSSRLPGMR-----------------------------------KKEDLTEEEDSSFFFVQLPTKLPRPLRQFQREIPKDDASASGVGTGADQALTPAPYHAVKKEVGAAVGXXXXXXXXXXXXXKXXAKAEQAVPPPEELSFDQGLLRMRPGKIGKLYVHQSGRARLVVGGVSFVVHPGLPVSFVEEGVSINAKKSSFCSFGQASGR 394
            GGFVPVG+DFFVGGG SGP AY+P+    G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          +++FGVG  + SK G  + GD+ +L+G     G RS+SS+LPGMR                                    + +LTEEEDSS FFVQLPTKLPRPL  FQR   KD ASA   G G  +A T  P  AVK+E G + G  XXXXXXXXXXXK  A  + +  P ++++FDQGL RMRPGKIGKLYVHQSG+ARLV+GGVS VVHPGLPVSFVE+GVSI+AK+ +FCSFGQ + R
Sbjct:   66 GGFVPVGQDFFVGGGGSGPAAYMPAGVTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENMFGVGESV-SKGGGGKEGDVLTLIGSDV--GRRSRSSKLPGMRVTGNVMSEDDSMRPVALPVTATAQTPGSRLFAQANNQAELTEEEDSSLFFVQLPTKLPRPLAAFQRG--KDGASAPVRGKGKGKA-TGGP--AVKEEAGES-GAGXXXXXXXXXXXKGAAAEKASEIPADDVAFDQGLRRMRPGKIGKLYVHQSGKARLVIGGVSLVVHPGLPVSFVEQGVSIDAKQKTFCSFGQVTKR 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13959.2754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHB7_ECTSI1.780e-5161.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXQ5_9PHAE1.310e-5056.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 242..394
e-value: 1.6E-17
score: 64.3
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 64..393

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13959contigH-elongata_contig13959:3133..7892 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13959.2754.1mRNA_H-elongata_contig13959.2754.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13959 3133..7892 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13959.2754.1 ID=prot_H-elongata_contig13959.2754.1|Name=mRNA_H-elongata_contig13959.2754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=394bp
MWCSFPPEKDYQAAVANYRSGGGGSGDWAEGGERRSKGWGGGRGYEGKHH
LGQRFQSRDSRFGGGRDGRGGGRGRFDQGRGRGRGGFVPVGEDFFVGGGT
SGPVAYIPSSSNAGGKGGSGDGRGWGGRGRGGGDTSESEDEMYRKKRLNK
ADAGSGKGKGVSSGRGAAPWVVGKEVDVGEVEDDGDDIFGVGSGLQSKSG
DKRHGDIFSLMGMPGAGGHRSKSSRLPGMRKKEDLTEEEDSSFFFVQLPT
KLPRPLRQFQREIPKDDASASGVGTGADQALTPAPYHAVKKEVGAAVGSG
SGVGGAADGGAKAKAKAEQAVPPPEELSFDQGLLRMRPGKIGKLYVHQSG
RARLVVGGVSFVVHPGLPVSFVEEGVSINAKKSSFCSFGQASGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4