prot_H-elongata_contig139507.2747.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139507.2747.1
Unique Nameprot_H-elongata_contig139507.2747.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
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BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Match: A0A6H5K8N1_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 5.640e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0 
Query:    1 MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDSRKIGE 55
            M SLRREVLGGYRRLMR R++AFK+DTTM+ ASK+QLR+EF+KNK VTD  KIG+
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFKDDTTMLEASKQQLRIEFNKNKAVTDPSKIGQ 55
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BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.980e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0 
Query:    1 MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDSRKI 53
            M SLRREVLGGYRRLMR R++AF++DTTM+ ASK+QLR+EF+KNK VTD  KI
Sbjct:    1 MASLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKI 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139507.2747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8N1_9PHAE5.640e-1974.55Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LJV8_ECTSI3.980e-1873.58Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 6..55
e-value: 1.3E-5
score: 25.2
NoneNo IPR availablePANTHERPTHR46749FAMILY NOT NAMEDcoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139507contigH-elongata_contig139507:765..938 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139507.2747.1mRNA_H-elongata_contig139507.2747.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139507 765..938 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139507.2747.1 ID=prot_H-elongata_contig139507.2747.1|Name=mRNA_H-elongata_contig139507.2747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MTSLRREVLGGYRRLMRARLIAFKEDTTMIGASKKQLRVEFSKNKGVTDS
RKIGESFL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR