prot_H-elongata_contig13827.2677.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13827.2677.1
Unique Nameprot_H-elongata_contig13827.2677.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length46
Homology
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BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Match: A0A6H5L354_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L354_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.780e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQ 43
            ALR VLPD  +++DEDLGLLFMKID N SG V WD+FT FLLQ
Sbjct:   26 ALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ 68
[Close]
BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Match: D7FNP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.090e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQ 43
            ALR VLPD  +++DEDLGLLFMKID N SG V WD+FT FLLQ
Sbjct:  106 ALRSVLPDIEDLTDEDLGLLFMKIDANGSGDVDWDEFTGFLLQ 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13827.2677.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L354_9PHAE2.780e-1172.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNP2_ECTSI5.090e-1172.09EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 11..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13827contigH-elongata_contig13827:1562..1699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13827.2677.1mRNA_H-elongata_contig13827.2677.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13827 1562..1701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13827.2677.1 ID=prot_H-elongata_contig13827.2677.1|Name=mRNA_H-elongata_contig13827.2677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
ALRLVLPDTSNVSDEDLGLLFMKIDVNSSGGVAWDDFTDFLLQASS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair