prot_H-elongata_contig13768.2646.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13768.2646.1
Unique Nameprot_H-elongata_contig13768.2646.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.140e-37
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0
Query:    2 DNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            DNQG KL KVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 116 bits (290), Expect = 8.120e-33
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KL K+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    7 KLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.110e-30
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KL KV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    6 KLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.530e-30
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 0
Query:    2 DNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            D+Q  KLVKV  V  RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 104 bits (260), Expect = 3.160e-28
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KL KVN+VLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    6 KLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 6.380e-28
Identity = 51/59 (86.44%), Postives = 52/59 (88.14%), Query Frame = 0
Query:    8 LVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            L KV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGD+LCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.270e-27
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KL KV++VLGRTGNTGNVTQVRVEF+DD        RSI+RNVKGPVREGD+LCLLEWEREARRLR
Sbjct:   39 KLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: G1X7F7_ARTOA (Uncharacterized protein n=8 Tax=Fungi TaxID=4751 RepID=G1X7F7_ARTOA)

HSP 1 Score: 102 bits (253), Expect = 3.690e-27
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KLVKV KVLGRTG+ G VTQVRVEFLDD TRSIIRNVKGPVRE D+LCLLE EREARRLR
Sbjct:    8 KLVKVTKVLGRTGSRGGVTQVRVEFLDDKTRSIIRNVKGPVREDDILCLLESEREARRLR 67          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.070e-27
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KL KV+KVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVRE D+LCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65          
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Match: A0A2C5YHA1_9HYPO (Uncharacterized protein n=5 Tax=sordariomyceta TaxID=715989 RepID=A0A2C5YHA1_9HYPO)

HSP 1 Score: 101 bits (251), Expect = 7.460e-27
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    7 KLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDMLCLLEWEREARRLR 66
            KLVKV KVLGRTG+ G VTQVRVEF+DD TRSIIRNVKGPVRE D+LCLLE EREARRLR
Sbjct:    8 KLVKVTKVLGRTGSRGGVTQVRVEFMDDQTRSIIRNVKGPVREDDILCLLESEREARRLR 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13768.2646.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI2.140e-3795.3840S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN8.120e-3390.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA3.110e-3085.0040S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
A0A4D9CYK0_9STRA4.530e-3083.08Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7GCW6_PHATC3.160e-2883.87Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
K3WAC4_GLOUD6.380e-2886.44Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A7S0CCP2_9STRA1.270e-2778.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
G1X7F7_ARTOA3.690e-2786.67Uncharacterized protein n=8 Tax=Fungi TaxID=4751 R... [more]
A0A1E7FGX9_9STRA7.070e-2778.46Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]
A0A2C5YHA1_9HYPO7.460e-2785.00Uncharacterized protein n=5 Tax=sordariomyceta Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 7..65
e-value: 6.6E-31
score: 106.1
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 6..66
NoneNo IPR availableGENE3D2.40.50.140coord: 1..66
e-value: 3.1E-34
score: 118.6
NoneNo IPR availablePANTHERPTHR10769:SF340S RIBOSOMAL PROTEIN S28coord: 6..66
NoneNo IPR availablePRODOMPD005541coord: 7..47
e-value: 5.0E-12
score: 165.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 5..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13768contigH-elongata_contig13768:487..883 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13768.2646.1mRNA_H-elongata_contig13768.2646.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13768 487..883 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13768.2646.1 ID=prot_H-elongata_contig13768.2646.1|Name=mRNA_H-elongata_contig13768.2646.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QDNQGSKLVKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG
DMLCLLEWEREARRLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR012340NA-bd_OB-fold