prot_H-elongata_contig137371.2631.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig137371.2631.1
Unique Nameprot_H-elongata_contig137371.2631.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length112
Homology
[Close]
BLAST of mRNA_H-elongata_contig137371.2631.1 vs. uniprot
Match: A0A7S2BFW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BFW4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.380e-5
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:   16 AFSSVSHLKENLDSLSFAIGLRKKGGQEGELE---RLLPMLKIQP---------RPNEVGYSECRHPDCIVREDKIKKL 82
            A+SS SH+ EN+D LSFA+GLR  G ++   E   R++PM +I P         + +E    EC +P+C+ R+D+ ++L
Sbjct:   23 AYSSFSHI-ENIDDLSFAVGLRY-GDEDDVTEAIGRIIPMSRILPGKPAQQRGGQKDEGSLEECDNPECLARQDRYREL 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137371.2631.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2BFW4_9STRA1.380e-537.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137371contigH-elongata_contig137371:112..1385 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137371.2631.1mRNA_H-elongata_contig137371.2631.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig137371 112..1385 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig137371.2631.1 ID=prot_H-elongata_contig137371.2631.1|Name=mRNA_H-elongata_contig137371.2631.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QQRPQKAFESGNVRDAFSSVSHLKENLDSLSFAIGLRKKGGQEGELERLL
PMLKIQPRPNEVGYSECRHPDCIVREDKIKKLQELTEKEKDGLEQLTSEI
ESLKVSAQRES*
back to top