prot_H-elongata_contig136839.2595.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig136839.2595.1
Unique Name	prot_H-elongata_contig136839.2595.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	81

Homology

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.610e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISGP DTF+FN  FTSKLKRVRIPL+S+KDSASGPAAS+S  LP AVEEDRRHLTEAAVVRIMKARKSLRHN+LVAEV
Sbjct:  617 GKGISGPGDTFSFNADFTSKLKRVRIPLVSIKDSASGPAASAS--LPPAVEEDRRHLTEAAVVRIMKARKSLRHNDLVAEV 695

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A6U2RFR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2RFR6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.880e-23
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPA------ASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG +DTFT+N  ++SKLKRV+IPL+S+KD  SG          + +A+P  VEEDRRHL EA++VRIMKARKSL HN+L+AEV
Sbjct:  642 GKGISGDKDTFTYNNNYSSKLKRVKIPLVSMKDCMSGKNLGGEANGGAKNAIPAPVEEDRRHLVEASIVRIMKARKSLHHNDLIAEV 728

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2XMU5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMU5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.090e-23
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKD-----SASGPAASS------SSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK I+  EDTFTFN  +TSKLKRVRIPL+S+K+     S  G AA S      S A+P  VEEDRRHL EAA+VRIMKARKSL HNEL+AEV
Sbjct:  633 GKAITSDEDTFTFNADYTSKLKRVRIPLVSMKETNPANSGDGSAAVSAQSLTESGAVPAPVEEDRRHLVEAAIVRIMKARKSLNHNELIAEV 724

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S1YM27_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM27_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-21
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPA----ASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            G+GI+  +DTFTFN  ++SKLKRVRIPL  VK+S+  PA    A S S +P  VEEDRRHL EAA+VRIMKARKSL HN+L+AEV
Sbjct:  627 GRGINSDDDTFTFNPEYSSKLKRVRIPL--VKESSVNPASATPAQSPSTVPAHVEEDRRHLVEAAIVRIMKARKSLSHNDLIAEV 709

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: B8CER2_THAPS (Cullin family-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CER2_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 3.800e-21
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDS-ASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK ISG +DTFT+N  +TSK+ +V++P++S++D+ AS  +  ++ +LP +VEEDRRHL EAA+VRIMKARK L HN+LVAEV
Sbjct:  619 GKAISGDDDTFTYNSDYTSKMTKVKVPMVSMRDATASAKSDGAAGSLPASVEEDRRHLLEAAIVRIMKARKMLNHNDLVAEV 700

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2R226_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R226_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.710e-21
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSA---------SGPAASSS----------SALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK IS  +DTFTFN  +TSKLKRV+IPL+S+K+++          GP A  +          SA+P  VEEDRRHL EAA+VRIMKARK+L HN+L+AEV
Sbjct:  223 GKSISNDDDTFTFNADYTSKLKRVKIPLVSMKETSVTNGSTATGGGPLAGRAGASHSNNMPGSAIPANVEEDRRHLVEAAIVRIMKARKTLHHNDLIAEV 322

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S3PYP2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYP2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.470e-20
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKD-SASGPAASSSSA--------------LPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG  D FTFN  +TSKLKRV+IPL+S+KD S SG     S A              LP  VEE+RRHL EAA VRIMKARK+L+HN+L+AEV
Sbjct:  630 GKGISGENDKFTFNVDYTSKLKRVKIPLVSMKDASRSGKKGDGSKAGMESNPNEAVAEGKLPALVEEERRHLVEAATVRIMKARKTLKHNDLIAEV 725

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2PQ28_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQ28_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.290e-20
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASS---------------------SSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG +DTFT+N  +TSK+ RV++P++S++D++S  +  +                     S+++PL+VEEDRRHL EAA+VRIMKARK L HN+LVAEV
Sbjct:  457 GKGISGDDDTFTYNADYTSKMTRVKVPMVSMRDASSASSGGAKGAGXXXXXXXXSKSAGLVDGSASVPLSVEEDRRHLLEAAIVRIMKARKVLNHNDLVAEV 558

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S1E356_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E356_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.030e-20
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 0

Query:    3 GISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSS---------ALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GI+   DTFTFN  +TSKLK+VRIPL  VK+S+    A++ S         A+P  VEEDRRHL EAA+VRIMKARKSL HN+L+AEV
Sbjct:    1 GITSDNDTFTFNIDYTSKLKKVRIPL--VKESSVARDANTDSVPTESAAGTAVPAPVEEDRRHLVEAAIVRIMKARKSLHHNDLIAEV 86

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BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2BUF6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUF6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.190e-20
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0

Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGI+  E TFTFN  ++SKLKRV+IPL+S K+   G A + S  +P  VEEDRRHL EAA+VRIMKARK+LRHN+L+AEV
Sbjct:  505 GKGIAANE-TFTFNTEYSSKLKRVKIPLVSQKEGGLGLAGAKS--VPETVEEDRRHLVEAAIVRIMKARKTLRHNDLIAEV 582

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot

BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FT61_ECTSI	1.610e-32	86.42	CULLIN_2 domain-containing protein n=2 Tax=Ectocar...	[more]
A0A6U2RFR6_9STRA	4.880e-23	60.92	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S2XMU5_9STRA	9.090e-23	64.13	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S1YM27_9STRA	1.500e-21	64.71	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
B8CER2_THAPS	3.800e-21	58.54	Cullin family-like protein n=1 Tax=Thalassiosira p...	[more]
A0A7S2R226_9STRA	9.710e-21	54.00	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S3PYP2_9STRA	2.470e-20	58.33	Hypothetical protein n=1 Tax=Chaetoceros debilis T...	[more]
A0A7S2PQ28_9STRA	3.290e-20	49.02	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S1E356_9STRA	6.030e-20	59.09	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A7S2BUF6_9STRA	6.190e-20	64.20	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 15..81 e-value: 9.9E-12 score: 46.6
IPR019559	Cullin protein, neddylation domain	PFAM	PF10557	Cullin_Nedd8	coord: 53..81 e-value: 1.9E-10 score: 40.6
None	No IPR available	PANTHER	PTHR11932	CULLIN	coord: 2..81
None	No IPR available	PANTHER	PTHR11932:SF126	CULLIN-3	coord: 2..81
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 49..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig136839	contig	H-elongata_contig136839:183..915 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig136839.2595.1	mRNA_H-elongata_contig136839.2595.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig136839 183..915 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig136839.2595.1 ID=prot_H-elongata_contig136839.2595.1|Name=mRNA_H-elongata_contig136839.2595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAV
EEDRRHLTEAAVVRIMKARKSLRHNELVAEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036388	WH-like_DNA-bd_sf
IPR019559	Cullin_neddylation_domain
IPR036390	WH_DNA-bd_sf