prot_H-elongata_contig136839.2595.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig136839.2595.1
Unique Nameprot_H-elongata_contig136839.2595.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.610e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISGP DTF+FN  FTSKLKRVRIPL+S+KDSASGPAAS+S  LP AVEEDRRHLTEAAVVRIMKARKSLRHN+LVAEV
Sbjct:  617 GKGISGPGDTFSFNADFTSKLKRVRIPLVSIKDSASGPAASAS--LPPAVEEDRRHLTEAAVVRIMKARKSLRHNDLVAEV 695          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A6U2RFR6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2RFR6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.880e-23
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPA------ASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG +DTFT+N  ++SKLKRV+IPL+S+KD  SG          + +A+P  VEEDRRHL EA++VRIMKARKSL HN+L+AEV
Sbjct:  642 GKGISGDKDTFTYNNNYSSKLKRVKIPLVSMKDCMSGKNLGGEANGGAKNAIPAPVEEDRRHLVEASIVRIMKARKSLHHNDLIAEV 728          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2XMU5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMU5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.090e-23
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKD-----SASGPAASS------SSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK I+  EDTFTFN  +TSKLKRVRIPL+S+K+     S  G AA S      S A+P  VEEDRRHL EAA+VRIMKARKSL HNEL+AEV
Sbjct:  633 GKAITSDEDTFTFNADYTSKLKRVRIPLVSMKETNPANSGDGSAAVSAQSLTESGAVPAPVEEDRRHLVEAAIVRIMKARKSLNHNELIAEV 724          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S1YM27_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM27_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-21
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPA----ASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            G+GI+  +DTFTFN  ++SKLKRVRIPL  VK+S+  PA    A S S +P  VEEDRRHL EAA+VRIMKARKSL HN+L+AEV
Sbjct:  627 GRGINSDDDTFTFNPEYSSKLKRVRIPL--VKESSVNPASATPAQSPSTVPAHVEEDRRHLVEAAIVRIMKARKSLSHNDLIAEV 709          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: B8CER2_THAPS (Cullin family-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CER2_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 3.800e-21
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDS-ASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK ISG +DTFT+N  +TSK+ +V++P++S++D+ AS  +  ++ +LP +VEEDRRHL EAA+VRIMKARK L HN+LVAEV
Sbjct:  619 GKAISGDDDTFTYNSDYTSKMTKVKVPMVSMRDATASAKSDGAAGSLPASVEEDRRHLLEAAIVRIMKARKMLNHNDLVAEV 700          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2R226_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R226_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.710e-21
Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSA---------SGPAASSS----------SALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GK IS  +DTFTFN  +TSKLKRV+IPL+S+K+++          GP A  +          SA+P  VEEDRRHL EAA+VRIMKARK+L HN+L+AEV
Sbjct:  223 GKSISNDDDTFTFNADYTSKLKRVKIPLVSMKETSVTNGSTATGGGPLAGRAGASHSNNMPGSAIPANVEEDRRHLVEAAIVRIMKARKTLHHNDLIAEV 322          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S3PYP2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYP2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.470e-20
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKD-SASGPAASSSSA--------------LPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG  D FTFN  +TSKLKRV+IPL+S+KD S SG     S A              LP  VEE+RRHL EAA VRIMKARK+L+HN+L+AEV
Sbjct:  630 GKGISGENDKFTFNVDYTSKLKRVKIPLVSMKDASRSGKKGDGSKAGMESNPNEAVAEGKLPALVEEERRHLVEAATVRIMKARKTLKHNDLIAEV 725          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2PQ28_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PQ28_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.290e-20
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASS---------------------SSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGISG +DTFT+N  +TSK+ RV++P++S++D++S  +  +                     S+++PL+VEEDRRHL EAA+VRIMKARK L HN+LVAEV
Sbjct:  457 GKGISGDDDTFTYNADYTSKMTRVKVPMVSMRDASSASSGGAKGAGXXXXXXXXSKSAGLVDGSASVPLSVEEDRRHLLEAAIVRIMKARKVLNHNDLVAEV 558          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S1E356_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E356_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.030e-20
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 0
Query:    3 GISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSS---------ALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GI+   DTFTFN  +TSKLK+VRIPL  VK+S+    A++ S         A+P  VEEDRRHL EAA+VRIMKARKSL HN+L+AEV
Sbjct:    1 GITSDNDTFTFNIDYTSKLKKVRIPL--VKESSVARDANTDSVPTESAAGTAVPAPVEEDRRHLVEAAIVRIMKARKSLHHNDLIAEV 86          
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Match: A0A7S2BUF6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUF6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.190e-20
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0
Query:    1 GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAVEEDRRHLTEAAVVRIMKARKSLRHNELVAEV 81
            GKGI+  E TFTFN  ++SKLKRV+IPL+S K+   G A + S  +P  VEEDRRHL EAA+VRIMKARK+LRHN+L+AEV
Sbjct:  505 GKGIAANE-TFTFNTEYSSKLKRVKIPLVSQKEGGLGLAGAKS--VPETVEEDRRHLVEAAIVRIMKARKTLRHNDLIAEV 582          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136839.2595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT61_ECTSI1.610e-3286.42CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6U2RFR6_9STRA4.880e-2360.92Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2XMU5_9STRA9.090e-2364.13Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1YM27_9STRA1.500e-2164.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B8CER2_THAPS3.800e-2158.54Cullin family-like protein n=1 Tax=Thalassiosira p... [more]
A0A7S2R226_9STRA9.710e-2154.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3PYP2_9STRA2.470e-2058.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2PQ28_9STRA3.290e-2049.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1E356_9STRA6.030e-2059.09Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2BUF6_9STRA6.190e-2064.20Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 15..81
e-value: 9.9E-12
score: 46.6
IPR019559Cullin protein, neddylation domainPFAMPF10557Cullin_Nedd8coord: 53..81
e-value: 1.9E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR11932CULLINcoord: 2..81
NoneNo IPR availablePANTHERPTHR11932:SF126CULLIN-3coord: 2..81
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 49..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136839contigH-elongata_contig136839:183..915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136839.2595.1mRNA_H-elongata_contig136839.2595.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig136839 183..915 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig136839.2595.1 ID=prot_H-elongata_contig136839.2595.1|Name=mRNA_H-elongata_contig136839.2595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GKGISGPEDTFTFNGRFTSKLKRVRIPLISVKDSASGPAASSSSALPLAV
EEDRRHLTEAAVVRIMKARKSLRHNELVAEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR019559Cullin_neddylation_domain
IPR036390WH_DNA-bd_sf