prot_H-elongata_contig13658.2578.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13658.2578.1
Unique Nameprot_H-elongata_contig13658.2578.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length177
Homology
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BLAST of mRNA_H-elongata_contig13658.2578.1 vs. uniprot
Match: A0A6H5L8S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.510e-38
Identity = 100/207 (48.31%), Postives = 119/207 (57.49%), Query Frame = 0 
Query:    1 MVWSRRGGQLLRSIPLHDVDSLTVIPDTKNLASVLEVHLASNVSGAACGDG---GSGDVASGVPSAGDRRGSGGNEA-------------------GVLILQARSRRETFLWAKVLQENVELLTKRHVSLENLDEETSLGDVEQLAKLLTHQLSELQQSGDGDRV---------------FNRSTGASTKRKPVLQGVHESIPEGAE 170
            +VW RRGG+LLRSI L D++SL VIPD    AS+LEV+++S  +     +G   G G   S +  AGD    G  EA                    VL+LQARSRRET LWAKVLQENVEL+TKR V LEN DEETSL DV+QLAKLLTHQLSELQ SG  +                  N S+  + K +  L G   SIPEGA+
Sbjct:  142 LVWDRRGGRLLRSISLRDIESLLVIPDEGAPASILEVYISSPSNSGGASNGTVTGDGSENSPIEGAGDE---GEEEAQXXXXXXXXXXXXXXXXXXXVLVLQARSRRETLLWAKVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINNSKNXXXXXXXXXXXXSKVNTSSPEAPKHRLGLFGADSSIPEGAD 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13658.2578.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8S0_9PHAE1.510e-3848.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13658contigH-elongata_contig13658:1601..4874 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13658.2578.1mRNA_H-elongata_contig13658.2578.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13658 839..5001 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13658.2578.1 ID=prot_H-elongata_contig13658.2578.1|Name=mRNA_H-elongata_contig13658.2578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MVWSRRGGQLLRSIPLHDVDSLTVIPDTKNLASVLEVHLASNVSGAACGD
GGSGDVASGVPSAGDRRGSGGNEAGVLILQARSRRETFLWAKVLQENVEL
LTKRHVSLENLDEETSLGDVEQLAKLLTHQLSELQQSGDGDRVFNRSTGA
STKRKPVLQGVHESIPEGAEDPTSDS*
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