prot_H-elongata_contig136001.2543.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig136001.2543.1
Unique Nameprot_H-elongata_contig136001.2543.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.620e-30
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 124
            MW +  TRPDIA AL A  R++H P+ R WKAL+QI +Y+NAT  +G+ +VRGSGL L VY DA YA     RRSV+G+AV +GGT +   S TQ+ V+ +T EAE +A  +  KEALF+RA L
Sbjct: 1034 MWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.650e-30
Identity = 66/124 (53.23%), Postives = 86/124 (69.35%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 124
            MW +  TRPDIA AL A  R++H P+ R WKAL+QI +Y+NAT  +G+ +VRGSGL L VY DA YA     RRSV+G+AV +GGT +   S TQ+ V+ +T EAE +A  +  KEALF+RA L
Sbjct: 1587 MWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.960e-29
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 121
            +W++++TRPDIANA+RA AR+   P   HW+A L I  Y   T   G+ F RG  SG  L  +ADADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+R
Sbjct:  171 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 293          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.630e-28
Identity = 64/123 (52.03%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 121
            +W++++TRPDIANA+RA AR+   P   HW+A L I  Y   T   G+ F RG  SG  L  +ADADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+R
Sbjct:  475 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 597          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.050e-27
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 121
            +W++++TRPDIAN++RA AR+S  P   HWKA L I  Y   T   G+ F  G  SG  L  + +ADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+R
Sbjct:  223 LWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 345          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.110e-27
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 121
            +W++++TRPDIAN++RA AR+S  P   HWKA L I  Y   T  +G+ F RG  SG  L  + DADYA+ + DRRSVSG  VM  G +I W S TQ CVT +T ++E VA+ D  KE LF+R
Sbjct:  542 LWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLR 664          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.420e-27
Identity = 60/121 (49.59%), Postives = 77/121 (63.64%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLS--VYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALF 119
            MW++  TRPDI+NA+RA ARHSH P   HWKA  +I  Y+  T  + L F R S + +   VY  AD+A+ + DRRSVSG  V + G  + W S TQKCV  +T EAE +A+ D  KEALF
Sbjct:   19 MWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALF 139          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.560e-27
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 121
            +W++++TRPDIAN++RA AR+S  P   HWKA L I  Y   T   G+ F RG  SG  L  + DADYA+ + DRRSVSG  VM  G +I W S  QKCVT +T  AE VA+ D  KE LF+R
Sbjct:  225 LWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILFLR 347          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5L7D7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.290e-26
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFM 120
            +W++++TRPDIAN++RA AR+   P   HWKA L I  Y   T  +G+   RG  SG  L  + DADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+
Sbjct:  776 LWIALLTRPDIANSVRAVARYCSAPKLIHWKAALSILGYAVRTGSLGISIKRGTVSGFSLIAFVDADYASRAADRRSVSGGGVMCSGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFL 897          
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.350e-26
Identity = 60/126 (47.62%), Postives = 80/126 (63.49%), Query Frame = 0
Query:    1 MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLS--VYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 124
            MW++  TR DI+NA+RA ARHSH P   HWKA  +I  Y+  T  + L+F R S + +   VY DAD+A+ + DRRSVSG  V +    + W S TQKCV+ +T EAE +A+ D  KEALF+   L
Sbjct:   44 MWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGML 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE1.620e-3053.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.650e-3053.23Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE1.960e-2952.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE1.630e-2852.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE1.050e-2750.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE1.110e-2750.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JW47_9PHAE1.420e-2749.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG67_9PHAE3.560e-2751.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7D7_9PHAE1.290e-2650.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCG6_9PHAE1.350e-2647.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 6..122
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136001contigH-elongata_contig136001:27..398 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136001.2543.1mRNA_H-elongata_contig136001.2543.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig136001 3..398 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig136001.2543.1 ID=prot_H-elongata_contig136001.2543.1|Name=mRNA_H-elongata_contig136001.2543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRF
VRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTT
ATCEAEDVALCDASKEALFMRAAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like