prot_H-elongata_contig135757.2524.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig135757.2524.1
Unique Nameprot_H-elongata_contig135757.2524.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length181
Homology
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A7S2XU55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XU55_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.340e-53
Identity = 103/179 (57.54%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            M+EV E++L+AEEAKERKIL++LLKIKNGTPPQRKTALRQ+TDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                +DR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   24 MEEVDEEDLSAEEAKERKILKLLLKIKNGTPPQRKTALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------VDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 138          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A7S2FXW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXW6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.960e-53
Identity = 103/179 (57.54%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV++++L+ EEAKERKI+++LLKIKNGTPPQRKTALRQ+TDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   17 MDEVEDEDLSLEEAKERKIMKLLLKIKNGTPPQRKTALRQVTDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 131          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: D7FI14_ECTSI (SF3b1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI14_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.550e-51
Identity = 109/179 (60.89%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV ++ELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  474 MDEVDDEELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARDFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 588          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.680e-50
Identity = 109/179 (60.89%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV ++ELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKAR FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  554 MDEVDDEELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARDFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 668          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A2P4X7D7_9STRA (Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7D7_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.300e-48
Identity = 103/179 (57.54%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV E+EL+ E A ERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  410 MDEVNEEELDPEAAMERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 524          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A3M7PDF5_BRAPC (Splicing factor 3B subunit (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PDF5_BRAPC)

HSP 1 Score: 166 bits (420), Expect = 4.990e-48
Identity = 99/179 (55.31%), Postives = 107/179 (59.78%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            +D V +D L  E+AKERKI+++LLKIKNGTPP RK+ALRQITDKAR FGAG LFNQILPLLMSP+LEDQERHLLVKV                                                                IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:   38 LDNVDDDSLPPEQAKERKIMKLLLKIKNGTPPMRKSALRQITDKAREFGAGPLFNQILPLLMSPSLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 152          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A662WMW2_9STRA (SF3b1 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMW2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.300e-47
Identity = 104/179 (58.10%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV E+ L+AE AKERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  462 MDEVDEEGLDAETAKERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 576          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: H3G976_PHYRM (SF3b1 domain-containing protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3G976_PHYRM)

HSP 1 Score: 175 bits (444), Expect = 1.760e-47
Identity = 103/179 (57.54%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV E++L+ E AKERKI+R+LLKIKNGTPPQRKTALRQ+TDKAR FGAGALFNQILPLLM+PTLEDQERHLLVKV                                                                IDR+LYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  404 MDEVNEEDLDPEAAKERKIMRLLLKIKNGTPPQRKTALRQLTDKAREFGAGALFNQILPLLMAPTLEDQERHLLVKV----------------------------------------------------------------IDRVLYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 518          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A1Z9QC94_9BACT (TOG domain-containing protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QC94_9BACT)

HSP 1 Score: 175 bits (444), Expect = 1.770e-47
Identity = 103/179 (57.54%), Postives = 112/179 (62.57%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV E++L++E+AKERKI+++LLKIKNGTPPQRKTALRQITDK+R FGAG LFNQILPLLMSPTLEDQERHLLVKV                                                                IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG
Sbjct:  447 MDEVDEEDLSSEDAKERKIMKLLLKIKNGTPPQRKTALRQITDKSREFGAGPLFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 561          
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Match: A0A7S2R6C6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6C6_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.420e-47
Identity = 103/179 (57.54%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    1 MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGAGALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLLRVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEG 179
            MDEV +D+L+ +EAKERKI+R+LLKIKNGTPPQRKTALRQITDKAR FGAG +FNQILPLLMSPTLEDQERHLLVKV                                                                IDRILYKLDDLVRP+VHKILVVIEPLLIDEDYYARVEG
Sbjct:  508 MDEVDDDDLSLDEAKERKIMRLLLKIKNGTPPQRKTALRQITDKAREFGAGPMFNQILPLLMSPTLEDQERHLLVKV----------------------------------------------------------------IDRILYKLDDLVRPFVHKILVVIEPLLIDEDYYARVEG 622          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135757.2524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XU55_9STRA1.340e-5357.54Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2FXW6_9STRA2.960e-5357.54Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
D7FI14_ECTSI7.550e-5160.89SF3b1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JJ74_9PHAE2.680e-5060.89TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2P4X7D7_9STRA2.300e-4857.54Splicing factor 3B subunit 1 (Fragment) n=1 Tax=Ph... [more]
A0A3M7PDF5_BRAPC4.990e-4855.31Splicing factor 3B subunit (Fragment) n=1 Tax=Brac... [more]
A0A662WMW2_9STRA1.300e-4758.10SF3b1 domain-containing protein n=2 Tax=Nothophyto... [more]
H3G976_PHYRM1.760e-4757.54SF3b1 domain-containing protein n=20 Tax=Peronospo... [more]
A0A1Z9QC94_9BACT1.770e-4757.54TOG domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A7S2R6C6_9STRA2.420e-4757.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038737Splicing factor 3B subunit 1-likePANTHERPTHR12097SPLICING FACTOR 3B, SUBUNIT 1-RELATEDcoord: 2..179
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 63..81
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 126..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..100
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..106
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135757contigH-elongata_contig135757:550..1152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135757.2524.1mRNA_H-elongata_contig135757.2524.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig135757 529..1152 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig135757.2524.1 ID=prot_H-elongata_contig135757.2524.1|Name=mRNA_H-elongata_contig135757.2524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MDEVQEDELNAEEAKERKILRMLLKIKNGTPPQRKTALRQITDKARIFGA
GALFNQILPLLMSPTLEDQERHLLVKVEIYSYYSSLLWFSCPFYCCLQLL
RVCLSIMVVYLYDLCAVFVAVHSAFPPRRQPCVWSCGHQQVIDRILYKLD
DLVRPYVHKILVVIEPLLIDEDYYARVEGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038737SF3b_su1-like