prot_H-elongata_contig135476.2508.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig135476.2508.1
Unique Nameprot_H-elongata_contig135476.2508.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: E9GF95_DAPPU (Helicase ATP-binding domain-containing protein n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GF95_DAPPU)

HSP 1 Score: 91.7 bits (226), Expect = 7.690e-23
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKVGKT 58
            H ++GE VF+AAHTSAGKTVVAEYAIA++++HMTRAIYTSPIKALSNQK+RDFK   T
Sbjct:   23 HLEKGEDVFIAAHTSAGKTVVAEYAIALSKKHMTRAIYTSPIKALSNQKFRDFKTTFT 80          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.190e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0
Query:    3 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            +R ECVFV+AHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 
Sbjct:  450 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKT 502          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.200e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0
Query:    3 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            +R ECVFV+AHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 
Sbjct:  605 ERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKT 657          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: E9H4C0_DAPPU (Helicase ATP-binding domain-containing protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9H4C0_DAPPU)

HSP 1 Score: 92.8 bits (229), Expect = 1.500e-22
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H ++GE VF+AAHTSAGKTVVAEYAIA++Q+HMTRAIYTSPIKALSNQK+RDFK 
Sbjct:    4 HLEKGEDVFIAAHTSAGKTVVAEYAIALSQKHMTRAIYTSPIKALSNQKFRDFKT 58          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A0P1AI70_PLAHL (Dead deah box rna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AI70_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 4.360e-22
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF++
Sbjct:  454 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRI 508          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A835YZN6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.830e-22
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    3 QRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFK 54
            +R ECVFVAAHTSAGKTVVAEYAIA+A  HMTRAIYTSPIKALSNQKYRDFK
Sbjct:   54 ERRECVFVAAHTSAGKTVVAEYAIALAAAHMTRAIYTSPIKALSNQKYRDFK 105          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: H3GLZ7_PHYRM (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GLZ7_PHYRM)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  354 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 408          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: K3WVU5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVU5_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 1.110e-21
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H +R ECVFVAAHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  446 HLERHECVFVAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 500          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A2P4XV81_9STRA (DEAD/DEAH box RNA helicase (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XV81_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H +R ECVFVAAHTSAGKTV+AEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  457 HLERHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 511          
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Match: A0A225WSS8_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSS8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.520e-21
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKV 55
            H +R ECVFVAAHTSAGKTV+AEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+ 
Sbjct:  423 HLERHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRT 477          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135476.2508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E9GF95_DAPPU7.690e-2377.59Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5KP96_9PHAE9.190e-2392.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJL2_ECTSI9.200e-2392.45DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
E9H4C0_DAPPU1.500e-2281.82Helicase ATP-binding domain-containing protein (Fr... [more]
A0A0P1AI70_PLAHL4.360e-2285.45Dead deah box rna n=1 Tax=Plasmopara halstedii Tax... [more]
A0A835YZN6_9STRA5.830e-2290.38P-loop containing nucleoside triphosphate hydrolas... [more]
H3GLZ7_PHYRM1.110e-2185.45Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
K3WVU5_GLOUD1.110e-2185.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4XV81_9STRA1.520e-2183.64DEAD/DEAH box RNA helicase (Fragment) n=2 Tax=Phyt... [more]
A0A225WSS8_9STRA1.520e-2183.64DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora me... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 5..54
e-value: 3.1E-7
score: 30.3
NoneNo IPR availableGENE3D3.40.50.300coord: 1..57
e-value: 3.7E-20
score: 73.8
NoneNo IPR availablePANTHERPTHR12131ATP-DEPENDENT RNA AND DNA HELICASEcoord: 2..54
NoneNo IPR availablePANTHERPTHR12131:SF8HELICASE SKI2Wcoord: 2..54
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135476contigH-elongata_contig135476:1086..1262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135476.2508.1mRNA_H-elongata_contig135476.2508.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig135476 1086..1262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig135476.2508.1 ID=prot_H-elongata_contig135476.2508.1|Name=mRNA_H-elongata_contig135476.2508.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
HHQRGECVFVAAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKY
RDFKVGKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase