prot_H-elongata_contig135381.2501.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig135381.2501.1
Unique Nameprot_H-elongata_contig135381.2501.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.930e-71
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 105
            LQS+QDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYT+ERLE+LDDAFKLFRCHTIMNCTK CPKHLNPGKAIANIKKRVHAL
Sbjct:  178 LQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.090e-68
Identity = 99/112 (88.39%), Postives = 101/112 (90.18%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ---------AYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 105
            LQS+QDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ         AYRWIDDSRDDYT+ERLE LDDAFKLFRCHTIMNCTK CPKHLNPGKAIANIKKRVHAL
Sbjct:  133 LQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQGGVEVGAVEAYRWIDDSRDDYTKERLELLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 244          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA)

HSP 1 Score: 203 bits (516), Expect = 6.900e-64
Identity = 88/103 (85.44%), Postives = 99/103 (96.12%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 105
            LQSV+DRKKLDGMYECI+CACCST+CPSYWWN DKYLGPAVLMQAYRWI+DSRD+YT+ERLE LDDAFKL+RCHTIMNC++ CPKHLNPGKAIA+IKKR+ AL
Sbjct:  161 LQSVEDRKKLDGMYECIMCACCSTACPSYWWNGDKYLGPAVLMQAYRWIEDSRDEYTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAL 263          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA)

HSP 1 Score: 201 bits (511), Expect = 4.200e-63
Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 105
            LQS+ DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNC++ CPKHLNPGKAIA+IKKR+ A+
Sbjct:  163 LQSIADRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIEDSRDEFTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAI 265          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7R9W5S4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5S4_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.530e-63
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 102
            LQS +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T+ERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAI NIKK++
Sbjct:  157 LQSREDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTKERLEDLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIGNIKKKL 256          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.600e-63
Identity = 88/102 (86.27%), Postives = 98/102 (96.08%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHA 104
            LQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD+YT+ERLEALDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A
Sbjct:  179 LQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA 280          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA)

HSP 1 Score: 198 bits (503), Expect = 7.960e-62
Identity = 86/100 (86.00%), Postives = 96/100 (96.00%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 102
            LQ+ ++R KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAIANIKK++
Sbjct:  167 LQTRENRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDEFTKERLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIANIKKKL 266          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A448ZPF1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPF1_9STRA)

HSP 1 Score: 197 bits (500), Expect = 6.110e-61
Identity = 87/103 (84.47%), Postives = 95/103 (92.23%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRVHAL 105
            LQS QDR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD  T++RL+ LDDAFKL+RCHTIMNCTK CPKHLNPGKAIA IKKR+ ++
Sbjct:  203 LQSKQDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDGQTKKRLDELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIAQIKKRMASI 305          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: A0A7S2LAL1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAL1_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.390e-60
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 102
            LQ+ +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDDY ++RL  LDDAFKL+RCHTIMNCTK CPK+LNPGKAIANIKK++
Sbjct:  174 LQTKEDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDYGKKRLAELDDAFKLYRCHTIMNCTKVCPKNLNPGKAIANIKKKL 273          
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Match: B8BYI4_THAPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI4_THAPS)

HSP 1 Score: 192 bits (489), Expect = 4.140e-60
Identity = 83/100 (83.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:    3 LQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKKRV 102
            LQ+ +DR KLDGMYECILCACCST+CPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T +RL  LDDAFKL+RCHTIMNC+K CPKHLNPGKAIA+IKK++
Sbjct:  138 LQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTDKRLAELDDAFKLYRCHTIMNCSKVCPKHLNPGKAIAHIKKKL 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135381.2501.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF5_ECTSI2.930e-7196.12Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5JQA7_9PHAE2.090e-6888.39Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A836C854_9STRA6.900e-6485.44Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A835Z536_9STRA4.200e-6384.47Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7R9W5S4_9STRA4.530e-6388.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
W7U0Z2_9STRA9.600e-6386.27Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0PK69_9STRA7.960e-6286.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A448ZPF1_9STRA6.110e-6184.47Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S2LAL1_9STRA3.390e-6085.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
B8BYI4_THAPS4.140e-6083.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009051Alpha-helical ferredoxinGENE3D1.10.1060.10coord: 1..105
e-value: 3.5E-51
score: 174.5
IPR009051Alpha-helical ferredoxinSUPERFAMILY46548alpha-helical ferredoxincoord: 3..103
NoneNo IPR availablePFAMPF13534Fer4_17coord: 17..90
e-value: 5.6E-11
score: 42.8
NoneNo IPR availablePANTHERPTHR11921:SF29SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIALcoord: 3..102
NoneNo IPR availablePANTHERPTHR11921SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEINcoord: 3..102
IPR004489Succinate dehydrogenase/fumarate reductase iron-sulphur proteinTIGRFAMTIGR00384TIGR00384coord: 3..99
e-value: 2.0E-35
score: 120.2
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 18..29
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 8..38
score: 7.676

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135381contigH-elongata_contig135381:230..1621 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135381.2501.1mRNA_H-elongata_contig135381.2501.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig135381 230..1621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig135381.2501.1 ID=prot_H-elongata_contig135381.2501.1|Name=mRNA_H-elongata_contig135381.2501.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
KSLQSVQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRW
IDDSRDDYTQERLEALDDAFKLFRCHTIMNCTKACPKHLNPGKAIANIKK
RVHAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009051Helical_ferredxn
IPR004489Succ_DH/fum_Rdtase_Fe-S
IPR0179004Fe4S_Fe_S_CS
IPR0178964Fe4S_Fe-S-bd