prot_H-elongata_contig13471.2456.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13471.2456.1
Unique Nameprot_H-elongata_contig13471.2456.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length130
Homology
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BLAST of mRNA_H-elongata_contig13471.2456.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 9.280e-20
Identity = 65/153 (42.48%), Postives = 77/153 (50.33%), Query Frame = 0 
Query:    9 GHGNKKAWLAREAGLVVLDMEEP--------------VRVVSTCSTSDRGILSLCGSFVHFVARVQNTTGPEAFSLRVDRSIATKS-PRPFPRQAKTSLELGGGGEKTCSTMGGEITS-----------------EKVVDFVRSQLDGSFALF 129
            G G + AW   E G    D   P              VRVV+TCSTSDRG+LSL G FVH VARVQNTTGP+ FSLRVD  I T S P P+ R    +    GG     +   G                     ++VV++VRSQ+DGSFALF
Sbjct:  329 GEGERFAWTPGE-GSRAADGARPKGGGRDDITGEAAAVRVVTTCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPAPYLRPRPAAASGSGGFAPGFTPWDGXXXXXXXXXXXXXXXXXXXXHQEVVEYVRSQIDGSFALF 480
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13471.2456.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKQ1_ECTSI9.280e-2042.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13471contigH-elongata_contig13471:2895..3839 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13471.2456.1mRNA_H-elongata_contig13471.2456.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13471 2529..5202 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13471.2456.1 ID=prot_H-elongata_contig13471.2456.1|Name=mRNA_H-elongata_contig13471.2456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MEGRRRDAGHGNKKAWLAREAGLVVLDMEEPVRVVSTCSTSDRGILSLCG
SFVHFVARVQNTTGPEAFSLRVDRSIATKSPRPFPRQAKTSLELGGGGEK
TCSTMGGEITSEKVVDFVRSQLDGSFALF*
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