prot_H-elongata_contig134156.2423.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig134156.2423.1
Unique Nameprot_H-elongata_contig134156.2423.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
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BLAST of mRNA_H-elongata_contig134156.2423.1 vs. uniprot
Match: D8LDB0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB0_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.170e-18
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 0 
Query:    1 QVAFSDVTVQDLPPTGVDDLSVKFIRLSQLTIEYLLHVQE---GYIQSLVRRLEAATERSQRLE 61
            +VAF +V+ +D+PPTGVDDLSVK IRLSQLTIEYLLHVQE   GYIQ LVR+LE A   +QRL+
Sbjct:   54 EVAFCEVSAEDIPPTGVDDLSVKLIRLSQLTIEYLLHVQECQEGYIQGLVRQLETANNNNQRLK 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134156.2423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDB0_ECTSI2.170e-1870.31C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..61
IPR032714Zinc finger protein DZIP1, N-terminalPFAMPF13815Dzip-like_Ncoord: 2..58
e-value: 7.6E-10
score: 38.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134156contigH-elongata_contig134156:402..1441 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134156.2423.1mRNA_H-elongata_contig134156.2423.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig134156 402..1441 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig134156.2423.1 ID=prot_H-elongata_contig134156.2423.1|Name=mRNA_H-elongata_contig134156.2423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
QVAFSDVTVQDLPPTGVDDLSVKFIRLSQLTIEYLLHVQEGYIQSLVRRL
EAATERSQRLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032714DZIP1_N