prot_H-elongata_contig1338.2398.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1338.2398.1
Unique Nameprot_H-elongata_contig1338.2398.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length334
Homology
BLAST of mRNA_H-elongata_contig1338.2398.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.100e-21
Identity = 66/199 (33.17%), Postives = 89/199 (44.72%), Query Frame = 0
Query:    1 MRLPRNAQCETMDRFDAFNKLRADWGVVAEWEFSHGRTPHGLVERLIASCHSIGNVERNTCWRRGACFVAHETAIALAGGSFALSLQFTQSSTSNLRTSGTLVVKAFGNRDCRAVWGALRFVISTVWSLFQEFPGLSWQARVMCPKHEGRIMHYLSGVKDIKGRAPGTPIVQPGAIRHCGCQQEVARRLRTVLPPSSPL 199
            MRL           FD          V  +WEF     P+GL+ERLIASCH +G VE   CWR GA F +H+  +    G      +   S TS   +      K FG  D   VW A+R+V S + +L +E+PG+ W   + C KH  + ++  S V+   G  P  P   P A R C C  E    LR  +    P+
Sbjct:  487 MRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHD--MRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGD-PLLPAAAPDA-RRCDCLLEPGGVLRLAVEELGPV 681          
BLAST of mRNA_H-elongata_contig1338.2398.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.250e-12
Identity = 60/200 (30.00%), Postives = 88/200 (44.00%), Query Frame = 0
Query:    1 MRLP----RNAQCETMDRFDAFNKLRADWGVVAEWEFSHGRTPHGLVERLIASCHSIGNVERNTCWRRGACFVAHETAIALAGGS---FALSLQFTQSSTSNLRTSGTLVVKAFGNRDCRAVWGALRFVISTVWSLFQEFPGLSWQARVMCPKHEGRIMHYLSGVKDIKGRAPGTPIVQPGAIRHCGCQQEVARRLRTVL 193
            MRLP     N Q E  +     ++      V  +W F      HGLVER+IASCH +G+V    CWR GA F ++  A A  GG    ++  +++ +   S  R    L V  FG      +W ALR+V S+V +    +PG+ W+    C  H    M++ + ++   G    T      A   C C       +R VL
Sbjct:  793 MRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSY--ARADDGGLNWLYSFVIRYDEEVGSGERV---LAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFKTPIEARIGDPILTDPDPRTAPNVCDCYTTEGNAMRLVL 987          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1338.2398.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE6.100e-2133.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI5.250e-1230.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 292..314
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 315..333
NoneNo IPR availableTMHMMTMhelixcoord: 292..314
NoneNo IPR availableTMHMMTMhelixcoord: 259..277

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1338contigH-elongata_contig1338:4124..6351 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1338.2398.1mRNA_H-elongata_contig1338.2398.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1338 2012..7037 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1338.2398.1 ID=prot_H-elongata_contig1338.2398.1|Name=mRNA_H-elongata_contig1338.2398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MRLPRNAQCETMDRFDAFNKLRADWGVVAEWEFSHGRTPHGLVERLIASC
HSIGNVERNTCWRRGACFVAHETAIALAGGSFALSLQFTQSSTSNLRTSG
TLVVKAFGNRDCRAVWGALRFVISTVWSLFQEFPGLSWQARVMCPKHEGR
IMHYLSGVKDIKGRAPGTPIVQPGAIRHCGCQQEVARRLRTVLPPSSPLE
KVFEAESREQGHESLDQDGEKRFTAALENAMNVTTEEDPILDEATETGGW
RTPEWVKDVILAGPLGAIAFCKTWAPLFKVADHWRDGAFAEAIPLTLFAL
LMAIAVAGAVAVGFRKLRQTYRLWSPRASTKND*
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