prot_H-elongata_contig133433.2375.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig133433.2375.1
Unique Nameprot_H-elongata_contig133433.2375.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length42
Homology
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: D7G5I6_ECTSI (RRP7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.500e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            QMRE+RREQLA LRSKFEQDKARVAKMKEQRKF+PF
Sbjct:  294 QMRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 329          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A835Z5W2_9STRA (Ribosomal RNA-processing protein 7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 9.860e-7
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            QMRE++REQLA LR KFEQDKA++ +MK  RKFKPF
Sbjct:  241 QMREAKREQLATLREKFEQDKAKIERMKAARKFKPF 276          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A4D9DEJ8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEJ8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.980e-6
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            QMRE++REQLA LR++FE+DKAR+ KMK  RKFKPF
Sbjct:  273 QMREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 308          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A507FMC8_9FUNG (RRM domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMC8_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 4.820e-6
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            QMRES+R QLA LR KFE+DK R+ K+KE RKFKP+
Sbjct:  238 QMRESKRNQLAELRKKFEEDKKRIEKLKESRKFKPY 273          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A8J1U6Q3_OWEFU (Ofus.G101883 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U6Q3_OWEFU)

HSP 1 Score: 49.7 bits (117), Expect = 9.180e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            QMRES+RE LA LR KFE+DK R+A MK  RKFKP+
Sbjct:  241 QMRESKREHLATLRQKFEEDKQRIAMMKASRKFKPY 276          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: F6VJW8_CIOIN (RRP7 domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6VJW8_CIOIN)

HSP 1 Score: 45.8 bits (107), Expect = 1.400e-5
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 0
Query:    6 QMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            Q+RES+R+++A LR KFE+DK R+  MKE RKF+PF
Sbjct:    8 QVRESKRQKIAELREKFEEDKLRIQAMKEARKFRPF 43          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI0018D6CB67 (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6CB67)

HSP 1 Score: 48.9 bits (115), Expect = 1.710e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    4 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            T QMRES+RE +A LR KFE+DK ++A+MK  RKFKPF
Sbjct:  233 TFQMRESKREHIAELRKKFEEDKQKIAQMKAARKFKPF 270          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI00142565DF (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142565DF)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    4 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            T QMRES+RE +A LR KFE+DK R+A+MK  RKFKP+
Sbjct:  241 TFQMRESKREHIAELRKKFEEDKLRIAEMKAARKFKPY 278          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: UPI00145B5B9E (ribosomal RNA-processing protein 7 homolog A-like n=2 Tax=Acipenseroidei TaxID=186622 RepID=UPI00145B5B9E)

HSP 1 Score: 48.9 bits (115), Expect = 1.750e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    4 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            T Q RES+RE +A LR KFE+DK R+A M+EQRKFKP+
Sbjct:  244 TWQHRESKREHIAELRKKFEEDKQRIAMMREQRKFKPY 281          
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Match: A0A8B7YS03_ACAPL (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YS03_ACAPL)

HSP 1 Score: 48.9 bits (115), Expect = 1.820e-5
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 0
Query:    4 TKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF 41
            T QMRES+RE +A LR KFE+DK ++A+MK  RKFKPF
Sbjct:  292 TFQMRESKREHIAQLRQKFEEDKQKIAQMKAARKFKPF 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133433.2375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G5I6_ECTSI1.500e-1091.67RRP7 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5W2_9STRA9.860e-772.22Ribosomal RNA-processing protein 7-domain-containi... [more]
A0A4D9DEJ8_9STRA1.980e-672.22RRM domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A507FMC8_9FUNG4.820e-669.44RRM domain-containing protein n=1 Tax=Chytriomyces... [more]
A0A8J1U6Q3_OWEFU9.180e-669.44Ofus.G101883 protein n=1 Tax=Owenia fusiformis Tax... [more]
F6VJW8_CIOIN1.400e-561.11RRP7 domain-containing protein n=2 Tax=Ciona intes... [more]
UPI0018D6CB671.710e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
UPI00142565DF1.740e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
UPI00145B5B9E1.750e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]
A0A8B7YS03_ACAPL1.820e-565.79ribosomal RNA-processing protein 7 homolog A-like ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
IPR024326Ribosomal RNA-processing protein 7, C-terminal domainPFAMPF12923RRP7coord: 6..41
e-value: 4.8E-11
score: 42.8
IPR040446Ribosomal RNA-processing protein 7PANTHERPTHR13191RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATEDcoord: 6..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133433contigH-elongata_contig133433:318..443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133433.2375.1mRNA_H-elongata_contig133433.2375.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig133433 318..443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig133433.2375.1 ID=prot_H-elongata_contig133433.2375.1|Name=mRNA_H-elongata_contig133433.2375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MVATKQMRESRREQLAVLRSKFEQDKARVAKMKEQRKFKPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024326RRP7_C
IPR040446RRP7