prot_H-elongata_contig132719.2339.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132719.2339.1
Unique Nameprot_H-elongata_contig132719.2339.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A6H5JEL6_9PHAE (TFIID_NTD2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.340e-27
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 0
Query:    2 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVSH 88
            QAYR L  FVA+SWELYR EL +V FPVFVHCYLTL+    G +A  LM+ WGG HE  ++++MTLL+MV  ++H  AS+Y +LV +
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLVKN 194          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: D7FXT3_ECTSI (TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT3_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.370e-25
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 0
Query:    2 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLV 86
            QAYR L  FVA+SWELYR EL +V FPVFVHCYLTL+    G +A  LM+ WGG HE  ++++MTLL+MV  ++H  AS+Y +LV
Sbjct:  108 QAYRGLSEFVAASWELYRPELEAVMFPVFVHCYLTLVMFDHGAEARGLMRAWGGEHEERFKDEMTLLKMVTAREHAEASDYCKLV 192          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A5E4PNZ5_9NEOP (TFIID_NTD2 domain-containing protein n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4PNZ5_9NEOP)

HSP 1 Score: 72.4 bits (176), Expect = 6.550e-13
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0
Query:    3 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 87
            AY +L  FV +S ++Y+ EL+++ +PVFVH YL LI     D A    + + G  E  YQED+  L +VKTKDH+  +E A++ S
Sbjct:   67 AYESLKKFVENSLDVYKFELSTLLYPVFVHMYLLLILYDHNDHAEKFFEKFSGEQEDYYQEDLQRLSVVKTKDHIKENEIAEIYS 151          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A7S4IIL6_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IIL6_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.660e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0
Query:    4 YRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQ 84
            Y +L  +V +S  + RAEL SV FPVFVHCYL LI  G  D+A+  M   G  H   + E++  L  +KT +HL  +E AQ
Sbjct:   73 YASLKEWVNASLNVNRAELKSVLFPVFVHCYLDLIAKGFFDEAVAFMGAHGSSHRDVHTEEVNTLMSIKTHEHLKENELAQ 153          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: F0ZZF6_DICPU (LisH domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZZF6_DICPU)

HSP 1 Score: 69.3 bits (168), Expect = 8.060e-12
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    1 VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 85
            +++Y+ L N++ SS ++Y+ EL S+ +PVFVH Y+ LI  G   QA  LM+  G  HE  + +D+ LLR +   DHL  +E   L
Sbjct:  265 LESYKKLRNWIHSSLDIYKNELLSILYPVFVHSYIDLITKGYPTQARELMEQIGPDHEEYFGDDLKLLRGISNTDHLKENELVDL 349          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: Q54KH7_DICDI (Transcription initiation factor TFIID subunit n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54KH7_DICDI)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    1 VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 85
            ++ Y+ L N++ SS ++Y+ EL S+ +PVFVH Y+ LI  G   QA  LM+  G  HE  + +D+ LLR +   DHL  +E   L
Sbjct:  281 LEQYKKLGNWIHSSLDIYKNELLSILYPVFVHSYIDLITKGYPQQARELMEKIGPDHEEYFGDDLKLLRGISNTDHLKENELVDL 365          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: V5GE31_ANOGL (Transcription initiation factor TFIID subunit 5 (Fragment) n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GE31_ANOGL)

HSP 1 Score: 66.2 bits (160), Expect = 1.130e-11
Identity = 30/81 (37.04%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    3 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYA 83
            +Y  L  FV  + ++Y+ EL ++ +PVFVH YL L+ +G  ++A++LMK +G   ++ YQ+D+  L +V  +DH+  +E A
Sbjct:   65 SYLELKYFVEGTLDIYKHELGTILYPVFVHMYLELVYNGHTEKAISLMKKFGPEQDSYYQDDLRKLALVIKRDHMNGNELA 145          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A1Y2GUC1_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUC1_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-11
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 0
Query:    2 QAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQL 85
            QAY +L  +V SS +LY+ EL S+ FP+FVH YL L+  G  DQA T M  +   H   + +D+  L  +    H+A +E AQ+
Sbjct:  127 QAYSSLRRWVESSLDLYKPELISILFPLFVHSYLNLVSRGLKDQASTFMNNFRADHLEMHPQDIARLATITDAQHVAENELAQM 210          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: A0A212ELQ3_DANPL (Wd-repeat protein n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A212ELQ3_DANPL)

HSP 1 Score: 66.6 bits (161), Expect = 7.030e-11
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    3 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 87
            AY +L  FV +S ++Y+ EL+++ +PVFVH YL LI     + A    + +G   E  YQED+T L +VK KD +  +E A++ S
Sbjct:   67 AYDSLKKFVENSLDIYKYELSTLLYPVFVHMYLALILYDHNEHAYKFFEKFGLEQEDYYQEDLTRLSIVKHKDQIKGNEIAEIYS 151          
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Match: UPI00200FDF20 (transcription initiation factor TFIID subunit 5 isoform X1 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200FDF20)

HSP 1 Score: 66.6 bits (161), Expect = 7.030e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    3 AYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLMKTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVS 87
            AY +L  FV +S ++Y+ EL+++ +PVFVH Y+ LI     + AM  M+ +G   E  YQED+  + +VK+K+ +  +E A++ S
Sbjct:   67 AYDSLKKFVETSLDVYKHELSTLLYPVFVHMYMVLILYDHTEHAMNFMEKFGPEQEDYYQEDLMKISIVKSKEQIKGNELAEIYS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132719.2339.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL6_9PHAE2.340e-2756.32TFIID_NTD2 domain-containing protein (Fragment) n=... [more]
D7FXT3_ECTSI2.370e-2557.65TFIID and SAGA subunit n=1 Tax=Ectocarpus siliculo... [more]
A0A5E4PNZ5_9NEOP6.550e-1342.35TFIID_NTD2 domain-containing protein n=1 Tax=Lepti... [more]
A0A7S4IIL6_9EUKA1.660e-1244.44Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
F0ZZF6_DICPU8.060e-1240.00LisH domain-containing protein n=1 Tax=Dictyosteli... [more]
Q54KH7_DICDI1.100e-1140.00Transcription initiation factor TFIID subunit n=1 ... [more]
V5GE31_ANOGL1.130e-1137.04Transcription initiation factor TFIID subunit 5 (F... [more]
A0A1Y2GUC1_9FUNG3.800e-1140.48WD40-repeat-containing domain protein n=1 Tax=Lobo... [more]
A0A212ELQ3_DANPL7.030e-1140.00Wd-repeat protein n=1 Tax=Danaus plexippus plexipp... [more]
UPI00200FDF207.030e-1137.65transcription initiation factor TFIID subunit 5 is... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037264TFIID subunit TAF5, NTD2 domain superfamilyGENE3D1.25.40.500coord: 1..88
e-value: 3.2E-24
score: 87.8
IPR037264TFIID subunit TAF5, NTD2 domain superfamilySUPERFAMILY160897Taf5 N-terminal domain-likecoord: 2..86
IPR007582TFIID subunit TAF5, NTD2 domainPFAMPF04494TFIID_NTD2coord: 2..85
e-value: 3.3E-23
score: 82.3
NoneNo IPR availablePANTHERPTHR19879TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 3..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132719contigH-elongata_contig132719:1015..1635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132719.2339.1mRNA_H-elongata_contig132719.2339.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132719 1015..1635 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132719.2339.1 ID=prot_H-elongata_contig132719.2339.1|Name=mRNA_H-elongata_contig132719.2339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
VQAYRALVNFVASSWELYRAELNSVTFPVFVHCYLTLIESGDGDQAMTLM
KTWGGGHEATYQEDMTLLRMVKTKDHLAASEYAQLVSH
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037264TFIID_NTD2_sf
IPR007582TFIID_NTD2