prot_H-elongata_contig132587.2329.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132587.2329.1
Unique Nameprot_H-elongata_contig132587.2329.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length221
Homology
[Close]
BLAST of mRNA_H-elongata_contig132587.2329.1 vs. uniprot
Match: D7G5K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.640e-30
Identity = 91/219 (41.55%), Postives = 119/219 (54.34%), Query Frame = 0 
Query:   14 TARVDLVRTRRHCHGFLECEPGLWLVFVL-SNHRAAGLPRVVGGVRYAGVSQERSRNRLRTMVFGRGVSSSPAA------GGGKISFENRDG---SP-PRERSAPAAAPVDFGRVSTKLKGGSSREVSSGATEDWVDETALRAAMAKAYDTFALLHGPVQSVLDSPVRVLQGVNSERADNGGGGSSGGVFTGAEILRRLTTARKRLRFARRASVQVRAH 221
            + +V++VRTR+HCHGFLECEPG+WLV V+ S  R    P   G  +    S+  +R+ LR+ VFGRG+  SP +      G G  +    D    SP P  R    ++P     V     GG      SG   DWVDETAL AAM  AY T AL+HGPV S LD+P  +    + E    GGGG       G E+LRRL +ARKRLR A++ ++ +  H
Sbjct:  101 SGKVEVVRTRQHCHGFLECEPGVWLVMVMVSRRRQEQQPEDAGNPK---ASRPSTRSLLRSAVFGRGIGISPPSATTDPRGHGSRADHRVDAAVRSPSPAARDRSPSSPAAARSVRNDRAGG--XXXXSG---DWVDETALHAAMGTAYQTLALMHGPVSSALDAPAALPPPPSGEGV--GGGGDI--TVPGLEVLRRLASARKRLRKAKKKALDLAEH 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132587.2329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5K6_ECTSI5.640e-3041.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132587contigH-elongata_contig132587:385..1507 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132587.2329.1mRNA_H-elongata_contig132587.2329.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132587 385..1507 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132587.2329.1 ID=prot_H-elongata_contig132587.2329.1|Name=mRNA_H-elongata_contig132587.2329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=221bp
GEEVKGRVARGSWTARVDLVRTRRHCHGFLECEPGLWLVFVLSNHRAAGL
PRVVGGVRYAGVSQERSRNRLRTMVFGRGVSSSPAAGGGKISFENRDGSP
PRERSAPAAAPVDFGRVSTKLKGGSSREVSSGATEDWVDETALRAAMAKA
YDTFALLHGPVQSVLDSPVRVLQGVNSERADNGGGGSSGGVFTGAEILRR
LTTARKRLRFARRASVQVRAH
back to top