prot_H-elongata_contig13253.2326.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13253.2326.1
Unique Nameprot_H-elongata_contig13253.2326.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length226
Homology
BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Match: D8LFP8_ECTSI (Similar to peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFP8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.850e-34
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 0
Query:    4 RIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGASSGRVCADTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITASARILGEDMFSVTLADANLVPKASLDVI 127
            +I K+GE  YFL+EP +DHL  AK WL E V +CE S G+  GR CAD+VLT+ LTSGQTLEGGF  HET+ DVY+F  SSVV  G +    + T     LGE M  ++LADA L+P+A+L V+
Sbjct:   83 KITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVV 206          
BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Match: A0A835ZG04_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG04_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.270e-21
Identity = 72/190 (37.89%), Postives = 100/190 (52.63%), Query Frame = 0
Query:    4 RIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGAS--SGRVCADTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITASARILGEDMFSVTLADANLVPKASLDVIN--------APNAPMSTLTPKAASKDAEEQLRLLKENSARKN--RDATAEKEKEEAMAKFRMDR 181
            +I KHGE  YF++E +L++L  AK WL++   A  A   A     + CA+ V+ + LTSGQTLEGGF AHETV  VY F  SSVV +  E L L           D   +TL DA L P+A L V+         A     +    +   ++A EQLR++KE   ++   RDA    EK   +++F+ DR
Sbjct:   83 KIFKHGEAVYFMTEVDLEYLTQAKQWLQQQAAAAMAMAPAEVPGAQACAECVIQVRLTSGQTLEGGFYAHETVRAVYDFVRSSVV-NAEEALLLRAPGHHSFTA-DKLDMTLQDAGLAPRAVLQVVKSGPEEGGAAEAMEEARRRARQQEREAHEQLRMIKETKMKEQVARDA----EKARILSEFKHDR 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFP8_ECTSI2.850e-3454.03Similar to peptide-N(4)-(N-acetyl-beta-glucosaminy... [more]
A0A835ZG04_9STRA8.270e-2137.89UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 143..174
NoneNo IPR availableGENE3D3.10.20.90coord: 47..128
e-value: 9.7E-10
score: 40.4
IPR001012UBX domainPFAMPF00789UBXcoord: 52..124
e-value: 1.5E-4
score: 21.9
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 51..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13253contigH-elongata_contig13253:5278..8022 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13253.2326.1mRNA_H-elongata_contig13253.2326.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13253 3871..8022 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13253.2326.1 ID=prot_H-elongata_contig13253.2326.1|Name=mRNA_H-elongata_contig13253.2326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
MDRRIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGASSGRVCA
DTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITAS
ARILGEDMFSVTLADANLVPKASLDVINAPNAPMSTLTPKAASKDAEEQL
RLLKENSARKNRDATAEKEKEEAMAKFRMDRAARASKPQHEDSGVEGKEG
SREFCVWSWAPFCSVNHVLFSSHKD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
IPR029071Ubiquitin-like_domsf