mRNA_H-elongata_contig13253.2326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13253.2326.1
Unique NamemRNA_H-elongata_contig13253.2326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Match: D8LFP8_ECTSI (Similar to peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFP8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.390e-31
Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:   10 RIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGASSGRVCADTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITASARILGEDMFSVTLADANLVPKASLDVI 381
            +I K+GE  YFL+EP +DHL  AK WL E V +CE S G+  GR CAD+VLT+ LTSGQTLEGGF  HET+ DVY+F  SSVV  G +    + T     LGE M  ++LADA L+P+A+L V+
Sbjct:   83 KITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSCEQSEGSVGGRACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVV 206
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BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Match: A0A835ZG04_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG04_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.880e-19
Identity = 72/190 (37.89%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   10 RIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGAS--SGRVCADTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITASARILGEDMFSVTLADANLVPKASLDVIN--------APNAPMSTLTPKAASKDAEEQLRLLKENSARKN--RDATAEKEKEEAMAKFRMDR 543
            +I KHGE  YF++E +L++L  AK WL++   A  A   A     + CA+ V+ + LTSGQTLEGGF AHETV  VY F  SSVV +  E L L           D   +TL DA L P+A L V+         A     +    +   ++A EQLR++KE   ++   RDA    EK   +++F+ DR
Sbjct:   83 KIFKHGEAVYFMTEVDLEYLTQAKQWLQQQAAAAMAMAPAEVPGAQACAECVIQVRLTSGQTLEGGFYAHETVRAVYDFVRSSVV-NAEEALLLRAPGHHSFTA-DKLDMTLQDAGLAPRAVLQVVKSGPEEGGAAEAMEEARRRARQQEREAHEQLRMIKETKMKEQVARDA----EKARILSEFKHDR 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13253.2326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFP8_ECTSI4.390e-3154.03Similar to peptide-N(4)-(N-acetyl-beta-glucosaminy... [more]
A0A835ZG04_9STRA8.880e-1937.89UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13253contigH-elongata_contig13253:3871..8022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionUBX domain
Ec32 orthologEc-01_001370.1
Hectar predicted targeting categoryother localisation
Exons8
Model size1994
Cds size678
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.768236-UTR-H-elongata_contig13253:3870..41721622929786.768236-UTR-H-elongata_contig13253:3870..4172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 3871..4172 -
1691679157.2938716-UTR-H-elongata_contig13253:3870..41721691679157.2938716-UTR-H-elongata_contig13253:3870..4172Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 3871..4172 -
1622929786.803517-UTR-H-elongata_contig13253:4187..51371622929786.803517-UTR-H-elongata_contig13253:4187..5137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 4188..5137 -
1691679157.3025677-UTR-H-elongata_contig13253:4187..51371691679157.3025677-UTR-H-elongata_contig13253:4187..5137Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 4188..5137 -
1622929786.8203034-UTR-H-elongata_contig13253:5213..52771622929786.8203034-UTR-H-elongata_contig13253:5213..5277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 5214..5277 -
1691679157.3103976-UTR-H-elongata_contig13253:5213..52771691679157.3103976-UTR-H-elongata_contig13253:5213..5277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13253 5214..5277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.8380861-CDS-H-elongata_contig13253:5277..54511622929786.8380861-CDS-H-elongata_contig13253:5277..5451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 5278..5451 -
1691679157.3192918-CDS-H-elongata_contig13253:5277..54511691679157.3192918-CDS-H-elongata_contig13253:5277..5451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 5278..5451 -
1622929786.8556833-CDS-H-elongata_contig13253:5827..58991622929786.8556833-CDS-H-elongata_contig13253:5827..5899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 5828..5899 -
1691679157.3287134-CDS-H-elongata_contig13253:5827..58991691679157.3287134-CDS-H-elongata_contig13253:5827..5899Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 5828..5899 -
1622929786.8676608-CDS-H-elongata_contig13253:6566..66491622929786.8676608-CDS-H-elongata_contig13253:6566..6649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 6567..6649 -
1691679157.33973-CDS-H-elongata_contig13253:6566..66491691679157.33973-CDS-H-elongata_contig13253:6566..6649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 6567..6649 -
1622929786.9034116-CDS-H-elongata_contig13253:6972..70551622929786.9034116-CDS-H-elongata_contig13253:6972..7055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 6973..7055 -
1691679157.3471377-CDS-H-elongata_contig13253:6972..70551691679157.3471377-CDS-H-elongata_contig13253:6972..7055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 6973..7055 -
1622929786.9200182-CDS-H-elongata_contig13253:7344..74451622929786.9200182-CDS-H-elongata_contig13253:7344..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 7345..7445 -
1691679157.35462-CDS-H-elongata_contig13253:7344..74451691679157.35462-CDS-H-elongata_contig13253:7344..7445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 7345..7445 -
1622929786.9348252-CDS-H-elongata_contig13253:7857..80221622929786.9348252-CDS-H-elongata_contig13253:7857..8022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 7858..8022 -
1691679157.3624742-CDS-H-elongata_contig13253:7857..80221691679157.3624742-CDS-H-elongata_contig13253:7857..8022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13253 7858..8022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13253.2326.1prot_H-elongata_contig13253.2326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13253 5278..8022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13253.2326.1

>prot_H-elongata_contig13253.2326.1 ID=prot_H-elongata_contig13253.2326.1|Name=mRNA_H-elongata_contig13253.2326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp
MDRRIKKHGEFFYFLSEPELDHLAHAKDWLKELVTACEASTGASSGRVCA
DTVLTINLTSGQTLEGGFKAHETVSDVYSFFHSSVVTDGVEGLQLSITAS
ARILGEDMFSVTLADANLVPKASLDVINAPNAPMSTLTPKAASKDAEEQL
RLLKENSARKNRDATAEKEKEEAMAKFRMDRAARASKPQHEDSGVEGKEG
SREFCVWSWAPFCSVNHVLFSSHKD*
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mRNA from alignment at H-elongata_contig13253:3871..8022-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13253.2326.1 ID=mRNA_H-elongata_contig13253.2326.1|Name=mRNA_H-elongata_contig13253.2326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4152bp|location=Sequence derived from alignment at H-elongata_contig13253:3871..8022- (Himanthalia elongata Himel1 dioecious)
ATGGACCGCAGGATCAAGAAGCACGGTGAATTTTTCTATTTTTTGTCGGA
ACCCGAGCTCGACCACCTGGCTCATGCGAAGGACTGGCTCAAGGAGCTGG
TAACGGCTTGCGAGGCGTCGACAGGGGCGTCGAGCGGCCGGGTATGCGCG
GACACAGTGTTGACGGTGAGGTTGGTACGCCTCTCTCTGTCTCTCTCTCT
TCCTCTCGTTTTTGTCACATATTTCGCGGTCTAGACGGTGTCTAGCGGAA
AACCCAACACAAATCCGGTACAGCTTGGGACTTGTTTTCGTTTCTTGAGG
TGAGGCGTTCTCGTGTTGGTACTATGTACAGTAGAATGTATGATTTTGCG
CGAGGAAGGGTCAGAGGCAAACAAGCTCGCCGCGTTCTATCTACGACGTA
TTTCTTGGGGATAAAAGCGCGACGCGCGCGCGGGTGACCGCGTTACCTCG
ACGCCGTCCAGGGTCTCATCACCTTCGGGCCTCACCGTTGCCCCTCCTCC
CTCGCTCTCCCCGCCGACTTTTTGGCCTCGATGTCTCATATCTTGGATTT
TTGGACCAAAATGCTGTCTCTTTTCAGATTAATCTTACGAGCGGGCAGAC
CTTGGAGGGCGGGTTTAAGGCGCACGAGACGGTTTCGGACGTTTACAGCT
TCTTCCACTCCAGCGTCGTCACCGACGGGTGAGGGGTTTCGACACGCCTA
GTGGGTGACTTTTTCCATGTTTGGGAAGAAGATCGGGTCAAGTACCCCGG
GGCAAAGCCAGAAAAGGCTTTTTCTCTTAAAAAACGTAGGGACGCCTTCC
AACCCTCCGAACATCAACGCCTTCTTAGCACCCATGAAAGATGCAGGTCA
GGGGACCAACTATCGTCAGGTTTAAATGTGTTTGTCCAGCATTTGGATAC
TTCGTGGGGACATGCCATGTCTTTCGTCTTATCGCATTCCCTGCCCTGAC
TGGCTGATACCGCGCAGGGTGGAGGGCTTGCAGTTGAGCATCACGGCTTC
AGCAAGAATTTTGGGGGAAGATATGTTCTCCGTCACCCTCGCAGACGCAA
GTGAGAAGCTTCGGATTGTTCCACCCAGCTGTGTCACATGGGCCACGGAC
GAAGTTCACTGAATGGTTTGACCTCCCTACCCACGAAAGCCTTCCCCTAC
TTAATATGTACCCCTTCTCCCCATGAGTGAAACGCAATTTGTCGAAAGTT
TCGCCCCATGAAGAACGTCTGCTCTACAGTAATTACAGGAGGTCCGGCTC
CCGTTTTGAGAATAGGTTTTTCCTTATCAATCCCTCTCTCCCTGCCCCGC
CCCTTCCAACCCATATGCAAAACCCGTCGCTCTTGCTGACAATGCCTCGC
GCCTGCGCATATCCCTCCGCCAGATCTTGTGCCCAAGGCTAGCCTCGATG
TTATCAACGCACCGAATGCGCCAATGTCGACACTGACGCCGAAAGCGGCC
TCGAAAGCGAGTCGCACAAGCGGCTCCGAGCTGGTTAGAGAAATCGAAAG
GGGGAGGGTTGCCGTAGCCGCTGTCTTGTCTATGTTTGTGTAGCTGCGTG
TGTCACTCTGATATGGTGTCCCGACAGCGTGTCTTGAAGTAGTTCGAGGG
TGTCACCACTCCCACGAGTTGCGACTTGCCTCTTCTGATTGCTCAGTGGC
GTCGGTCCACCTCCGTGCACGAGGTAGATATGTTCCGGGTTGCGTAATAA
TTTGTGCTTGGCGCGCTCTTTCCGTTCAGCGTTTGTGTACGCGGGCTGCT
TTGATTGGCCTGGCTCTCGCCCTCTCTTTCCCGCGCCTGTTGGCACGGAA
TGCTTGAGATGGACGAAAAAAAACAATGGAGGTGGTCCTTTGCTCTCGAC
GTCTTTTCAAACGTAACCGTCCCATTGGAGCAAAACGGTTCGTCATGTGA
ATGGCAGATGGACTATGTACGTCTTCCACCTCCCCTGTGTGATAACACCA
ACCTGCCCCTCTCTATATATATGAATATGTATCGCTCGGGAATGGTAGAG
CAATGGTCCTATTGCTAGCTGTTGCTCTTAGGCTTCGCAGTTGCTTACCC
TAATGTTCCACTGCGTATGGCGCCCCTCCCCGCCCTTTCTGACGTGGTGC
TGTCACGCGCCTACGAAGTGCAGGACGCGGAAGAACAGCTCCGATTGCTA
AAGGAGAATAGTGCGAGGAAGAACAGGGACGCCACGGCAGAAAAGGTTAA
ATTGGGCCGTTTCCTGCGGCACCGGGATGCACTGCATCGCGACCAATTAC
GCCGAACGAGCTAAAAACGATGATTGCACGCCCGGGGCTTTCACCCAGGG
AGCGTTCAAGCCTCTTTGTCAGGCGTTCCGTTTTCTTTGTCGATCGAAGG
GGTGGGGAGGCCAAATCGAGAGGGTTTTAATGGCGCACCGTATCGGGGGA
TAGATCCGAAACTACTGATGCAGTTGGTTTTTTCGCTACTTCTTATCCTC
GAAGGCGTGAATTTCGCGGTCTGATCACACGCGGACGGTGCGATACGATT
ATAAATGTGTGTGTTTTTTTCCTTAATTGGTGCATGAAAATATGTTTGAT
GCGCGGACCACGCTTCCTCAGGAAAAGGAAGAGGCGATGGCAAAATTTAG
GATGGATCGAGCTGCGCGCGCGTCTAAGCCGCAGCACGAGGATAGCGGAG
TTGAAGGCAAGGAGGGCTCGCGAGAGTTTTGTGTGTGGTCATGGGCTCCT
TTCTGTTCGGTCAATCATGTTTTGTTCTCTTCTCACAAAGATTGAAGCTG
AATCGTGCCAGAGGCGGGGCGATTTTCCGTAGCCTCTGGATAAAGACAGC
GTCGGCACCGTGCTTCATCCACTCTCTTGCTCGCTCGTCCCTCGTCCTTC
GATGCTACCTTGTGCTTCGTCCCAAATTGCACCAGAAATGAAGGGCGGTC
GGAGGTGAAGCTACCACCAAAGACAAAAGACTATCGAGGAATGTTTTCCG
TGTCATTTTATTCCCCCTTTCTTCCCTCTCTTCCTATTTTTCGTTGTGCC
ATGGATCATTTTCCACTGCTAATAGCCTCTCACTCATCGAAGGCATTTTC
GTGGGGGGGGGGGTATGTCTGTTCTGGTGTCAGGGAAAAAACAATCCCAT
CCGTCCCGCAATCAAGCTTGCATCAGCCCTGAAAAGTGGAGATATGTGTA
ATAGTGGTGCTTTGATTGGGTATTTGTTGAAATAAAAGATGGTGACTAGG
CTTGTCTTTTTTGAGGGTATTGCTTTGTTATCTAGAAAGTAATATATATA
CCACAAGCTTGTGTGTGTGTGATTATGTGCGTGCTTGTGATTCGTTGATT
TTCGGTCTTTGCGTAAACATGGTCTTAACCGCGGTGTTACGCCAGCGTTG
TTGTTCCCTTGCGTGCGTTGGTATCCCTTTTTCCTCTTAATGTCTCTGGT
GAGGCATTAGACATGTTCAGGTAATCCAAACACGTTCTTACTTATTCTAT
CTACCCCTCGCAACGCATCCGCCCTTACATTGTGCGCTGGAGTTTAGCTC
ATGAAGGATTGATTCCGCCCGTCTGTTTCCGGCTTATGTCTCTTCGAGAG
ACATGTCGTCGGCGCTCCTGCTGTCTCGCTCGCGCGGTTGTCTTCACCTA
CATCCATCGGTCGACGTCGTATCACTATGTGTGATAATTCAGGGGGCTTA
ACCACCGATCGCTTCAGATACGACCAACGGTGGAGGAGGGTCAAAAAGAG
TTACTGTAGTCAAGTTTTGACCATGGATCGCGCGCCCTCGGGAGGACGGA
GCATTGATTTTACACGATTGATCGCCGATCGGTTTTTCCTAAACTGCCAA
AGGTGATTCAGTTTTCGCCTTCTCAGACCACTGTACCCAGTAGCTGCACA
AATTTTGTCTGAATCGGGAGAGGAATATTTACGAACTGAAGAAATGGGGG
ATAGATGATCGAATGATGGTCCTAAAGGAACTTTAAATAAAGTAACACAC
AATTTCTTCGCACAAGATAAAATGCGCGATGCTCTTGACGTGGACTCTAA
CCCAAGCACAAATGAGCTGTCTCGCAAACTTCCTCCTACTGCTGAGAGTG
ATCCTTCGACCCGTCCTCCTGGCTTTACCACTCGTGGTGTAATGAATGTA
GTAAATGTGAATGTTCGGAGGGTTTTGTTGAGTTGATATGTTTTTTACAA
AG
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Coding sequence (CDS) from alignment at H-elongata_contig13253:3871..8022-

>mRNA_H-elongata_contig13253.2326.1 ID=mRNA_H-elongata_contig13253.2326.1|Name=mRNA_H-elongata_contig13253.2326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig13253:3871..8022- (Himanthalia elongata Himel1 dioecious)
ATGGACCGCAGGATCAAGAAGCACGGTGAATTTTTCTATTTTTTGTCGGA
ACCCGAGCTCGACCACCTGGCTCATGCGAAGGACTGGCTCAAGGAGCTGG
TAACGGCTTGCGAGGCGTCGACAGGGGCGTCGAGCGGCCGGGTATGCGCG
GACACAGTGTTGACGATGGACCGCAGGATCAAGAAGCACGGTGAATTTTT
CTATTTTTTGTCGGAACCCGAGCTCGACCACCTGGCTCATGCGAAGGACT
GGCTCAAGGAGCTGGTAACGGCTTGCGAGGCGTCGACAGGGGCGTCGAGC
GGCCGGGTATGCGCGGACACAGTGTTGACGATTAATCTTACGAGCGGGCA
GACCTTGGAGGGCGGGTTTAAGGCGCACGAGACGGTTTCGGACGTTTACA
GCTTCTTCCACTCCAGCGTCGTCACCGACGGATTAATCTTACGAGCGGGC
AGACCTTGGAGGGCGGGTTTAAGGCGCACGAGACGGTTTCGGACGTTTAC
AGCTTCTTCCACTCCAGCGTCGTCACCGACGGGGTGGAGGGCTTGCAGTT
GAGCATCACGGCTTCAGCAAGAATTTTGGGGGAAGATATGTTCTCCGTCA
CCCTCGCAGACGCAAGGTGGAGGGCTTGCAGTTGAGCATCACGGCTTCAG
CAAGAATTTTGGGGGAAGATATGTTCTCCGTCACCCTCGCAGACGCAAAT
CTTGTGCCCAAGGCTAGCCTCGATGTTATCAACGCACCGAATGCGCCAAT
GTCGACACTGACGCCGAAAGCGGCCTCGAAAATCTTGTGCCCAAGGCTAG
CCTCGATGTTATCAACGCACCGAATGCGCCAATGTCGACACTGACGCCGA
AAGCGGCCTCGAAAGACGCGGAAGAACAGCTCCGATTGCTAAAGGAGAAT
AGTGCGAGGAAGAACAGGGACGCCACGGCAGAAAAGGACGCGGAAGAACA
GCTCCGATTGCTAAAGGAGAATAGTGCGAGGAAGAACAGGGACGCCACGG
CAGAAAAGGAAAAGGAAGAGGCGATGGCAAAATTTAGGATGGATCGAGCT
GCGCGCGCGTCTAAGCCGCAGCACGAGGATAGCGGAGTTGAAGGCAAGGA
GGGCTCGCGAGAGTTTTGTGTGTGGTCATGGGCTCCTTTCTGTTCGGTCA
ATCATGTTTTGTTCTCTTCTCACAAAGATTGAGAAAAGGAAGAGGCGATG
GCAAAATTTAGGATGGATCGAGCTGCGCGCGCGTCTAAGCCGCAGCACGA
GGATAGCGGAGTTGAAGGCAAGGAGGGCTCGCGAGAGTTTTGTGTGTGGT
CATGGGCTCCTTTCTGTTCGGTCAATCATGTTTTGTTCTCTTCTCACAAA
GATTGA
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