prot_H-elongata_contig131536.2278.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig131536.2278.1
Unique Nameprot_H-elongata_contig131536.2278.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length136
Homology
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BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.690e-47
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0 
Query:    4 ACRILARPGKATVVAIRRPIV----GGVRRHASNLKPADQ--AYFLNLGPHYKREGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGLPLQYGKIYSQEPMFSFTPAGEDED 124
            A R+LAR G   V A RR        G RR ASNLKP DQ  AYFLNLGPHYK+EGWE IMA T VASA +LI G+G+GPET IKEWARDEALARNVRE +GLP++YGKIYSQ+P ++FT A  D++
Sbjct:    2 ASRMLARSG---VAAGRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQQPRYTFTAAELDDE 125
[Close]
BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.060e-7
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0 
Query:   43 LNLGPHYKREGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGLPLQYGKIYSQE 111
            L  G   KRE WE I   T V     L +GL + P TSI++WA+ EALAR +    G  ++ G+ Y+QE
Sbjct:   44 LGPGEKRKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQE 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131536.2278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE5.690e-4765.35NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA3.060e-742.03NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019329NADH:ubiquinone oxidoreductase, ESSS subunitPFAMPF10183ESSScoord: 47..102
e-value: 4.1E-5
score: 23.7
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131536contigH-elongata_contig131536:365..1575 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131536.2278.1mRNA_H-elongata_contig131536.2278.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig131536 365..1575 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig131536.2278.1 ID=prot_H-elongata_contig131536.2278.1|Name=mRNA_H-elongata_contig131536.2278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MSTACRILARPGKATVVAIRRPIVGGVRRHASNLKPADQAYFLNLGPHYK
REGWEEIMAVTGVASAAVLIIGLGFGPETSIKEWARDEALARNVREAKGL
PLQYGKIYSQEPMFSFTPAGEDEDEEEEDEEDEED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019329NADH_UbQ_OxRdtase_ESSS_su