prot_H-elongata_contig131287.2259.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig131287.2259.1
Unique Nameprot_H-elongata_contig131287.2259.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
[Close]
BLAST of mRNA_H-elongata_contig131287.2259.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.140e-22
Identity = 57/85 (67.06%), Postives = 64/85 (75.29%), Query Frame = 0 
Query:    8 RSEQWMLSIYEEAASSTNAPRGEPISNPLALADAGEMGGTAGK----VRIGLIAVDVRTGKVVHDAFVESSGQRQELDTRLRHLR 88
            RSEQW++S+YEE AS   +  GEP+S  +AL D G  GG A K    VR+GLIAVDVRTGKVVHDAF E SGQRQEL TRLRHLR
Sbjct:  567 RSEQWLMSMYEEDASPGASTEGEPLSISIALNDGG--GGGAEKQVERVRVGLIAVDVRTGKVVHDAFEEGSGQRQELHTRLRHLR 649
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131287.2259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.140e-2267.06MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036678MutS, connector domain superfamilyGENE3D3.30.420.110coord: 8..88
e-value: 1.7E-9
score: 39.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131287contigH-elongata_contig131287:808..1532 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131287.2259.1mRNA_H-elongata_contig131287.2259.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig131287 808..1532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig131287.2259.1 ID=prot_H-elongata_contig131287.2259.1|Name=mRNA_H-elongata_contig131287.2259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
SNGCSLFRSEQWMLSIYEEAASSTNAPRGEPISNPLALADAGEMGGTAGK
VRIGLIAVDVRTGKVVHDAFVESSGQRQELDTRLRHLR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036678MutS_con_dom_sf