prot_H-elongata_contig1311.2250.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1311.2250.1
Unique Nameprot_H-elongata_contig1311.2250.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length223
Homology
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.230e-38
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KDMG  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + ++    ++W S
Sbjct:   67 EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMMCGAPVVWRS 279          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.770e-37
Identity = 84/217 (38.71%), Postives = 128/217 (58.99%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVKKGSK--IPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KD+G  R  +G  I    + R L I Q+  Y ES+++ F  +       P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+++    D RRSVSG + +L    ++W S
Sbjct:   98 EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPWLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRS 310          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.500e-37
Identity = 86/217 (39.63%), Postives = 128/217 (58.99%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KDMG  R  +   I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:   43 EGEDECIVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQK-AYTESIIKKFGQENTKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRS 255          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.050e-37
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KDMG  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ +  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:  324 EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRS 536          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.360e-36
Identity = 85/217 (39.17%), Postives = 128/217 (58.99%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KD+G  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +   EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:  259 EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ--PEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRS 471          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.380e-36
Identity = 84/217 (38.71%), Postives = 127/217 (58.53%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ K  +    A + + F++KD+G  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  E K K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:   98 EGEDECIVCLYVDDMLIASRQKTVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRS 310          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3L5P5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6A3L5P5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.840e-36
Identity = 85/217 (39.17%), Postives = 129/217 (59.45%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KD+G  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  ED +K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:   98 EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGIIQK-AYTESIIKKFGQENAKPCLAPLEPGVQ-LTKGDEPQTEEDIDKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRS 310          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.160e-36
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++  A +    A + + F++KDMG  R  +G  I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L +  ++W S
Sbjct:  590 EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQL--EAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRS 802          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.530e-36
Identity = 83/217 (38.25%), Postives = 127/217 (58.53%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +G+ E +V ++VDD+L  ++DK  +    A + + F++KD+G  R  +G  I     G+ L I Q+  Y ES+++ F  +  K S +P    +  I K D P+  EDK K++  PYR  +G+LM+ A  TRPDIA     ++RF ENPG AH    +K+++YLL TKD GI Y G  G +L   AY+D+D+    D RRSVSG + ++    ++W S
Sbjct:  200 EGDDECIVCLYVDDMLIASRDKDVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMDGKTLGISQR-AYTESIIKKFGQENAKPSLMPLDPSLHLI-KDDGPQTKEDKAKMKSRPYRSLIGSLMYLACETRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGLLGTKLT--AYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRS 412          
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Match: A0A6A3HAR6_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HAR6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.020e-36
Identity = 85/217 (39.17%), Postives = 127/217 (58.53%), Query Frame = 0
Query:    7 DGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDVRCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVK--KGSKIPATSGMSTISKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCENPGPAHEKTTMKIIQYLLHTKDWGIKYGGQ-GCELCMEAYTDSDFGACLDTRRSVSGAVFVLAKGAIIWYS 220
            +GE E +V ++VDD+L  ++ KA +    A + + F++KD G  R  +   I    + R L I Q+  Y ES+++ F  +  K    P   G+  ++K DEP+  EDK K++  PYR  VG+LM+ A  TRPDI+ A   ++RF ENPG  H    +K+++YLL TKD GI Y G  G +L  EAY+D+D+    D RRSVSG + +L    ++W S
Sbjct:   98 EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDTGRARFILSIEIDYDMERRTLGISQK-AYTESIIKKFGQENAKPCLTPLEPGVQ-LTKSDEPQTEEDKAKMKSRPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWVGNRDDRRSVSGMLLMLCGAPVVWRS 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1311.2250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A4F359_9STRA5.230e-3839.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA1.770e-3738.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3VCN8_9STRA3.500e-3739.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA6.050e-3739.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q908_9STRA1.360e-3639.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3HKQ8_9STRA1.380e-3638.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3L5P5_9STRA1.840e-3639.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YGI7_9STRA2.160e-3639.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A225UK66_9STRA2.530e-3638.25Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3HAR6_9STRA5.020e-3639.17Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 7..87
e-value: 1.5E-10
score: 41.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1311contigH-elongata_contig1311:13604..14272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1311.2250.1mRNA_H-elongata_contig1311.2250.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1311 13511..14605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1311.2250.1 ID=prot_H-elongata_contig1311.2250.1|Name=mRNA_H-elongata_contig1311.2250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
MFRKVVDGEAEVVVVVHVDDILTHAKDKATMDIFPAELRQNFKLKDMGDV
RCYMGCHITRTRKGRELKIDQQHLYLESMVEMFDVKKGSKIPATSGMSTI
SKVDEPRNPEDKEKIRKFPYREAVGALMWTATMTRPDIASAGRAVTRFCE
NPGPAHEKTTMKIIQYLLHTKDWGIKYGGQGCELCMEAYTDSDFGACLDT
RRSVSGAVFVLAKGAIIWYSRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2