prot_H-elongata_contig13103.2243.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13103.2243.1
Unique Nameprot_H-elongata_contig13103.2243.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length447
Homology
BLAST of mRNA_H-elongata_contig13103.2243.1 vs. uniprot
Match: D7G7U9_ECTSI (E3 ubiquitin protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U9_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 7.120e-144
Identity = 275/466 (59.01%), Postives = 336/466 (72.10%), Query Frame = 0
Query:    1 MKRGASDGGGGVSPGHPAKLQKTTSEQGKSSDGDNNGRDDSSLLQQRNYELAVDMRRRKRQEAELEKKLAQAWSRQGHFDATLSAVNRAWDQQVLSDLRAAAAELGLGPRPLSANV--------------NQEEGE-LEITCSDACAVATEAGTPTSELSIMEKLLLPTAEVLAMDATDSSCADQLLKDMGKNLPDAGEERP--RDLLGCMAGTSGAFCDLDSDGYGLESREGVESEGATEISEIEQRLQEKARFTAELAGRLFQALQAHLMSLPPEARRQTLDRTHAELVAEKRKLETERAFLSDQLTMARIRCIELSESLTSLREDHRKVNRTLDKLAVDGV--ELPCDNNLASASVGRWGNSVAGRAHASKGGXXXXXXGHASSFKREGEGTMPDREGLMAALEEAQTLSEARQKEIERCRGDKAEAERQLTEIKATTLLDTKKVDLSGHPQVQRVRHYIEAD 447
            MKRG SD G   SPG P+KLQKT+S     SDGDN G D  S+LQQ+N+ELAVDMRRRKRQEAELEKKL QAW+RQGHFDATLS+VNRAW +QVLSDL  AA ELGLGPRPL+  V                EEGE + ++  D  +V  E   P SELSIM+KL++P +EVLAMDAT+ SC D+LLK MGK  P+  EE    R+ L  MAGTS AF DLD+DGYGL+SRE V++E AT+I+E+++ L+EKARFT ELAGRLFQALQAHLM+LPPE+R+ TLD+   E+V +K++LE ER FLSD+LT AR RC+ELSES+TSLRE+ RK NRTLDKLA DGV  E+P +    S + GR G++  G A      X     G  + +KR G     D E L+AALEEAQTL+E R KE+ER R +K EAER+LT+ KA+T L+TKK DLSGHPQ QR+   +EA+
Sbjct:    1 MKRGVSDTGAATSPG-PSKLQKTSS----GSDGDNGGPDAKSILQQQNHELAVDMRRRKRQEAELEKKLTQAWARQGHFDATLSSVNRAW-RQVLSDLSTAAGELGLGPRPLNVTVAPGGDXXXXXXXXXXXEEGEVIMVSVKDGLSVPVEGQEPASELSIMQKLIMPASEVLAMDATEFSCGDRLLKGMGKK-PEKSEEAASSRERLAGMAGTSNAFYDLDTDGYGLKSRESVKAEAATDIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRKDTLDKAQLEMVGKKKRLEAERDFLSDELTQARKRCMELSESVTSLRENCRKANRTLDKLAADGVIVEVPSEKGT-SGTGGRRGSAEGGAAXXXXXXXSTYSVG--TGYKR-GVNGAGDVEDLLAALEEAQTLAETRLKEMERWRTEKTEAERELTQFKASTELETKKADLSGHPQFQRLSTQLEAE 455          
BLAST of mRNA_H-elongata_contig13103.2243.1 vs. uniprot
Match: A0A6H5KZC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZC3_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 1.460e-87
Identity = 175/321 (54.52%), Postives = 211/321 (65.73%), Query Frame = 0
Query:   33 GDNNGRDDSSLLQQRNYELAVDMRRRKRQEAELEKKLAQAWSRQGHFDATLSAVNRAWDQQVLSDLRAAAAELGLGPRPLSANV---------------NQEEGE------------------------------LEITCSDACA--------------VATEAGTPTSELSIMEKLLLPTAEVLAMDATDSSCADQLLKDMGKNLPDAGEERP--RDLLGCMAGTSGAFCDLDSDGYGLESREGVESEGATEISEIEQRLQEKARFTAELAGRLFQALQAHLMSLPPEARRQTLDRTHAELVAEKRKLETERAFLSDQLT 292
            GDN G D  S+L+Q+N+ELAVDMRRRKRQEAELEKKLAQAW+RQGHFDATLSAVNRAW +QVLSDL  AA ELGLGPRPL+ +V                 EEGE                              ++   SDA                V  E   P SELSIM+KL++P AE+LAMDAT+ SC D+LLK MGK  P+  EE    R+ L  MAGTS AF DLD+DGYGL+SRE V++E A +I+E+++ L+EKARFT ELAGRLFQALQAHLM+LPPE+RR TLD+   E+V +K++LE ER FLSD+LT
Sbjct:   11 GDNGGPDAKSILRQQNHELAVDMRRRKRQEAELEKKLAQAWARQGHFDATLSAVNRAW-RQVLSDLSTAAGELGLGPRPLNVSVAPGGDXXXXXXXXXXXXEEGEVIMVSVKDGLSGETFLLFFSQSDTPHSHYIMDANTSDALRPSSHRVLLPTQWTPVPVEGREPASELSIMQKLIMPAAEILAMDATEFSCGDRLLKGMGKK-PEKSEEAASARERLAGMAGTSNAFYDLDTDGYGLKSRESVKAEAAADIAELDKALKEKARFTGELAGRLFQALQAHLMALPPESRRDTLDKAQLEMVGKKKRLEAERDFLSDELT 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13103.2243.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7U9_ECTSI7.120e-14459.01E3 ubiquitin protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KZC3_9PHAE1.460e-8754.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 263..290
NoneNo IPR availableCOILSCoilCoilcoord: 394..421
IPR013956E3 ubiquitin ligase Bre1PANTHERPTHR23163RING FINGER PROTEIN-RELATEDcoord: 18..422

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13103contigH-elongata_contig13103:442..6542 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13103.2243.1mRNA_H-elongata_contig13103.2243.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13103 442..6542 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13103.2243.1 ID=prot_H-elongata_contig13103.2243.1|Name=mRNA_H-elongata_contig13103.2243.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=447bp
MKRGASDGGGGVSPGHPAKLQKTTSEQGKSSDGDNNGRDDSSLLQQRNYE
LAVDMRRRKRQEAELEKKLAQAWSRQGHFDATLSAVNRAWDQQVLSDLRA
AAAELGLGPRPLSANVNQEEGELEITCSDACAVATEAGTPTSELSIMEKL
LLPTAEVLAMDATDSSCADQLLKDMGKNLPDAGEERPRDLLGCMAGTSGA
FCDLDSDGYGLESREGVESEGATEISEIEQRLQEKARFTAELAGRLFQAL
QAHLMSLPPEARRQTLDRTHAELVAEKRKLETERAFLSDQLTMARIRCIE
LSESLTSLREDHRKVNRTLDKLAVDGVELPCDNNLASASVGRWGNSVAGR
AHASKGGSSKGGSGHASSFKREGEGTMPDREGLMAALEEAQTLSEARQKE
IERCRGDKAEAERQLTEIKATTLLDTKKVDLSGHPQVQRVRHYIEAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013956E3_ubiquit_lig_Bre1