prot_H-elongata_contig13052.2215.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13052.2215.1
Unique Nameprot_H-elongata_contig13052.2215.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length164
Homology
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 8.690e-24
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 0
Query:    1 MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD--GVLGARVSSSSGRVDAVEEGV 122
            M Y +++A  +QYIT+PCIQ +MA  V  + QG LQGA+  LR V+QG+A  +YGQ+FS G+S   +NALGFV+PGLPLF ++ C   AL +A  ALR+    G    + +++   V+A E+G+
Sbjct:  376 MCYVVLVATVLQYITEPCIQGVMANHVGADRQGSLQGAVQCLRNVSQGLAGVLYGQIFSLGVSTRVENALGFVLPGLPLFCASGCGATALTIAWYALRKAGETGAADPKSTANPSDVEAEEDGM 499          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.560e-15
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    1 MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQLD 101
            MLYP ++  A+Q IT+PC+QAIMA  V    QG LQGA+ +LR+V +G+AA V+ QVFS G S  F+ A        P FL+   SL++L VA   LR+LD
Sbjct:  451 MLYPALVFGALQNITEPCLQAIMATFVGPELQGSLQGAVMSLRVVGEGVAAPVFTQVFSAGASVGFEEA--------PFFLATAISLVSLAVAWWPLRKLD 543          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9BWC4_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BWC4_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 7.890e-6
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 0
Query:    1 MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 93
            MLY +I  +A+  I  P IQ++M+R VD + QG+LQGAI +LR +       ++ QVF+  +S   +      VPG P +L+A   L +L++A
Sbjct:  318 MLYAVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMAGPVLFTQVFALAISPQARIH----VPGAPYYLAAVLLLSSLLLA 406          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9AH41_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9AH41_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-5
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0
Query:    2 LYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALR 98
            LY +I  +A+  I  P IQ++M+R VD + QG+LQGAI +LR +   +   ++ Q+F+  +S      L    PG P +L+A   L +L++A+   R
Sbjct:  319 LYSVIPFIALWGIAAPAIQSLMSRRVDPSSQGKLQGAINSLRAITGMVGPVLFTQIFALAISPRASIHL----PGAPYYLAAVLLLSSLLLAAYVTR 411          
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Match: A0A2V9FSN8_9BACT (Tetracycline resistance MFS efflux pump n=4 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2V9FSN8_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.670e-5
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
Query:   14 ITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIAAAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVA 93
            I  P +Q++M+R VD + QG+LQGAI +LR V       ++ QVF+F +S  F   L    PG P FL+    L +L++A
Sbjct:  328 IAAPAMQSLMSRHVDPSSQGKLQGAINSLRAVTGMAGPILFTQVFAFAISARFSLHL----PGAPYFLAGLLLLSSLLLA 403          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13052.2215.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNH6_ECTSI8.690e-2445.97Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
D7FNH7_ECTSI1.560e-1548.51Tetracycline-efflux transporter n=1 Tax=Ectocarpus... [more]
A0A2V9BWC4_9BACT7.890e-637.63Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
A0A2V9AH41_9BACT1.070e-535.05Tetracycline resistance MFS efflux pump n=1 Tax=Ac... [more]
A0A2V9FSN8_9BACT2.670e-540.00Tetracycline resistance MFS efflux pump n=4 Tax=un... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 64..68
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 69..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..63
IPR036259MFS transporter superfamilySUPERFAMILY103473MFS general substrate transportercoord: 5..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13052contigH-elongata_contig13052:110..1488 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13052.2215.1mRNA_H-elongata_contig13052.2215.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13052 26..3947 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13052.2215.1 ID=prot_H-elongata_contig13052.2215.1|Name=mRNA_H-elongata_contig13052.2215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MLYPIILAMAVQYITDPCIQAIMARLVDENCQGRLQGAITTLRIVAQGIA
AAVYGQVFSFGLSNTFKNALGFVVPGLPLFLSAQCSLMALVVASCALRQL
DGVLGARVSSSSGRVDAVEEGVCTVSLTCGDVGDSAKNTTTLEEDESLSE
MSEPLLGDTAPET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf