prot_H-elongata_contig130430.2210.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig130430.2210.1
Unique Name	prot_H-elongata_contig130430.2210.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	97

Homology

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A6H5J9L3_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L3_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 8.150e-62
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 0

Query:    2 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            NFEYTPKPSFPGPFHIFNEPNEEA+IRRFF HV+ELRPQIIVTYNGD+FDWPFVD+RAK YGLDMEKEIGVGLQ+NGEYRGRC AHMDAIYWVKR
Sbjct:    2 NFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 96

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.340e-56
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 0

Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            +NFEYTPKPSFPGPFHIFNEPNEEA+IRRFF HV+ELRPQIIVTYNGD+FDWPFVD+RAK YGLDMEKEIGVGLQ+NGEYRGRC AHMDAIYWVKR
Sbjct:  337 ENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 432

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.600e-41
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 0

Query:    2 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGV------GLQSNG--EYRGRCCAHMDAIYWVKR 96
            +FEYTPKPS+PGPFHIFNE  EE LIRRFF+    LRPQI+VTYNGD+FDWPF++ RA +YGLD+ KE+G+      G +++G  EYRGRCC H+DA +WV+R
Sbjct:  112 DFEYTPKPSYPGPFHIFNELTEEDLIRRFFSEYQRLRPQIVVTYNGDFFDWPFLEQRAAMYGLDIGKELGIERVGGNGKENSGGGEYRGRCCVHLDAFHWVQR 214

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.810e-41
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0

Query:    2 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            +FEYTPKPSFPGPF IFNE NEE L+R+F +H+ ELRPQI VTYNGD+FDWPF++ R + YG++M KEIG+       YRGRC AH+D   WV R
Sbjct:   20 DFEYTPKPSFPGPFKIFNEANEEQLLRKFLSHIQELRPQIFVTYNGDFFDWPFLEKRLQKYGINMGKEIGIYKNREDVYRGRCSAHLDCFAWVNR 114

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7R9U2R1_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 5.970e-40
Identity = 59/96 (61.46%), Postives = 74/96 (77.08%), Query Frame = 0

Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            ++FEYTPKPS+PG F +FNE +EE L+RRF  H  E RPQI VTYNGD+FDWPF++ RAKVYG+D+  E+G+ LQ   E+RGRC  H+DA  WV R
Sbjct:   87 EDFEYTPKPSYPGVFTVFNEASEEGLLRRFLDHCREARPQIYVTYNGDFFDWPFIEQRAKVYGMDIRSELGIELQRE-EFRGRCAVHLDAFAWVNR 181

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A3M6VP32_9STRA (DNA polymerase epsilon catalytic subunit n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP32_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.560e-38
Identity = 63/97 (64.95%), Postives = 78/97 (80.41%), Query Frame = 0

Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 96
            Q+FEYTPK ++PGPF +FNE NEE L++RFF HV E +P I VTYNGD+FDWPF++ RA+VYG++M +EIGV L +  GEYRGRC  HMDA  WVKR
Sbjct:  361 QDFEYTPKVAYPGPFIVFNEENEEKLLKRFFEHVIEEQPHIFVTYNGDFFDWPFIETRAQVYGINMAREIGVSLDERTGEYRGRCSVHMDAFCWVKR 457

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S2SRI6_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SRI6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.890e-38
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 0

Query:    2 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            +FEYTPKP +PGPF +FNE +E A + RFF H  ELRP I VTYNGD+FDWPFV+ RAKVYG++M  EIGV   S+G Y G C  HMD  +WV+R
Sbjct:  150 DFEYTPKPEYPGPFEVFNEADERATLERFFTHCKELRPNIWVTYNGDFFDWPFVETRAKVYGMNMHTEIGVRETSSGVYTGSCAVHMDCFHWVQR 244

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A7S1XYH8_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYH8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 6.110e-38
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 0

Query:    7 PKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR 96
            PKPS+PG F +FNE NEEAL+RRFF H  ELRPQI VTYNGD+FDWPFV+ RA+VYG+D++ E+GV +   GEY G+C  H+DA  WV R
Sbjct:    1 PKPSYPGVFTVFNEENEEALLRRFFDHCRELRPQIYVTYNGDFFDWPFVEARAQVYGMDVKSELGVSVTRQGEYLGQCAVHLDAFAWVNR 90

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A484EGT0_BRELC (DNA polymerase epsilon catalytic subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT0_BRELC)

HSP 1 Score: 144 bits (362), Expect = 7.380e-38
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 0

Query:    2 NFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 96
            +FEYTPK  +PGPF +FNEPNEE L++RFF HV E +P I VTYNGD+FDWPF+D RA+V+G++M  E+G+ L + +GEYRGRC  HMDA  WVKR
Sbjct:  365 DFEYTPKAEYPGPFILFNEPNEEKLLKRFFEHVIEEKPHIFVTYNGDFFDWPFIDARAQVHGINMAYELGISLDERSGEYRGRCSVHMDAFCWVKR 460

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BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Match: A0A2P4Y878_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y878_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.340e-38
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 0

Query:    1 QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYFDWPFVDDRAKVYGLDMEKEIGVGL-QSNGEYRGRCCAHMDAIYWVKR 96
            Q+FEYTPK  +PGPF +FNE NEE L++RFF HV E +P I VTYNGD+FDWPF++ RA+V+G++M  EIGV L + +GEYRGRC  HMDA  WVKR
Sbjct:  364 QDFEYTPKEDYPGPFIVFNEENEEQLLKRFFEHVIEEKPHIFVTYNGDFFDWPFIEARAQVHGINMAHEIGVSLDERSGEYRGRCSVHMDAFCWVKR 460

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot

BLAST of mRNA_H-elongata_contig130430.2210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J9L3_9PHAE	8.150e-62	91.58	DNA polymerase epsilon catalytic subunit n=1 Tax=E...	[more]
D8LQC0_ECTSI	1.340e-56	90.63	DNA polymerase epsilon catalytic subunit n=1 Tax=E...	[more]
A0A7S2UHD4_9STRA	2.600e-41	63.11	DNA polymerase epsilon catalytic subunit (Fragment...	[more]
A0A7S2FZE0_9STRA	6.810e-41	63.16	DNA polymerase epsilon catalytic subunit (Fragment...	[more]
A0A7R9U2R1_9STRA	5.970e-40	61.46	DNA polymerase epsilon catalytic subunit (Fragment...	[more]
A0A3M6VP32_9STRA	1.560e-38	64.95	DNA polymerase epsilon catalytic subunit n=2 Tax=P...	[more]
A0A7S2SRI6_9STRA	1.890e-38	62.11	DNA polymerase epsilon catalytic subunit (Fragment...	[more]
A0A7S1XYH8_9STRA	6.110e-38	64.44	DNA polymerase epsilon catalytic subunit (Fragment...	[more]
A0A484EGT0_BRELC	7.380e-38	63.54	DNA polymerase epsilon catalytic subunit n=1 Tax=B...	[more]
A0A2P4Y878_9STRA	9.340e-38	63.92	DNA polymerase epsilon catalytic subunit (Fragment...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006133	DNA-directed DNA polymerase, family B, exonuclease domain	PFAM	PF03104	DNA_pol_B_exo1	coord: 2..96 e-value: 4.5E-25 score: 88.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..96 e-value: 1.7E-22 score: 82.0
None	No IPR available	PANTHER	PTHR10670:SF0	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	coord: 1..96
IPR029703	DNA polymerase epsilon catalytic subunit	PANTHER	PTHR10670	DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A	coord: 1..96
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..96

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig130430	contig	H-elongata_contig130430:688..1571 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig130430.2210.1	mRNA_H-elongata_contig130430.2210.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig130430 688..1571 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig130430.2210.1 ID=prot_H-elongata_contig130430.2210.1|Name=mRNA_H-elongata_contig130430.2210.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
QNFEYTPKPSFPGPFHIFNEPNEEALIRRFFAHVSELRPQIIVTYNGDYF
DWPFVDDRAKVYGLDMEKEIGVGLQSNGEYRGRCCAHMDAIYWVKR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006133	DNA-dir_DNA_pol_B_exonuc
IPR036397	RNaseH_sf
IPR029703	POL2
IPR012337	RNaseH-like_sf