prot_H-elongata_contig13.2188.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13.2188.1
Unique Nameprot_H-elongata_contig13.2188.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length127
Homology
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BLAST of mRNA_H-elongata_contig13.2188.1 vs. uniprot
Match: D7FSS1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS1_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.000e-7
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 0 
Query:   23 NSCLNTSSSDYRDCSAGSYSTTSYPGELYLDDCGFVDADIPDIIECFDNFGRDSLSNIHLGDNDFRDLPEYLFDG 97
            NSCL+  + D   C AGS        E+ L +CG  D D+ D++ECFDN GR S++ I LG N F  L   LFDG
Sbjct:   36 NSCLDPEN-DLYGCEAGST-------EINLSNCGIGDEDLEDLVECFDNVGRASVTAIWLGSNSFTSLAAGLFDG 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13.2188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS1_ECTSI1.000e-745.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..126
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.664
NoneNo IPR availableTMHMMTMhelixcoord: 4..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13contigH-elongata_contig13:20072..22501 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13.2188.1mRNA_H-elongata_contig13.2188.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13 19610..22546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13.2188.1 ID=prot_H-elongata_contig13.2188.1|Name=mRNA_H-elongata_contig13.2188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MKPVLYLIFTTLAFPVIVTNGLNSCLNTSSSDYRDCSAGSYSTTSYPGEL
YLDDCGFVDADIPDIIECFDNFGRDSLSNIHLGDNDFRDLPEYLFDGTWK
TICSSTCLKACLMVLPNSNHCTSAAT*
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