prot_H-elongata_contig129715.2168.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig129715.2168.1
Unique Nameprot_H-elongata_contig129715.2168.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.020e-61
Identity = 95/119 (79.83%), Postives = 103/119 (86.55%), Query Frame = 0 
Query:    1 TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAARDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEK 119
            TVLSLAQGLGLEFVPL AL FLD  DI  CG+ NRFL+KAA +EGVW+AARDRLWEGKV VP S++ M  K GYIASL+DSKRTWL  +ELTSFSWWFRFKQQAGEAWTAQDPWYRNEK
Sbjct:   24 TVLSLAQGLGLEFVPLSALLFLDARDIGACGAANRFLHKAAGDEGVWRAARDRLWEGKVFVPESSRAMRAKEGYIASLRDSKRTWLHAEELTSFSWWFRFKQQAGEAWTAQDPWYRNEK 142
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.560e-60
Identity = 94/120 (78.33%), Postives = 103/120 (85.83%), Query Frame = 0 
Query:    1 TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAARDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEKV 120
            TVLSLAQGLGLEFVPL AL FLD  DI  CG+ NRFL+KAA +EGVW+AARDRLWEGKV VP S++ M  K GYIASL+DSKRTWL  +ELTSFSWWFRFKQQAGEAWT+QDPWYRNEK 
Sbjct:   27 TVLSLAQGLGLEFVPLSALLFLDARDIEACGAANRFLHKAAGDEGVWRAARDRLWEGKVFVPESSRAMRAKEGYIASLRDSKRTWLDAEELTSFSWWFRFKQQAGEAWTSQDPWYRNEKA 146
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A7S0XJN4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XJN4_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 4.650e-15
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:   38 YKAAVNEGV-WQAARDRLWEGKVHVPPSAKMMT-----PKAGYIASLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRN 117
            + AA+  G+ W+ A ++ W  KV++P  ++ +      PK  Y  +L DSKRT+L +DE+TSF+W FRFK  AGE WT  DPW+++
Sbjct:   53 WNAAMCSGLFWREACEKKWRDKVYIPKDSRELLNVKNDPKEAYRTALIDSKRTFLTIDEITSFTWSFRFKAAAGEHWTESDPWWQS 138
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BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Match: A0A7S0C110_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C110_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.160e-8
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:   77 SLQDSKRTWLGLDELTSFSWWFRFKQQAGEAWTAQDPWYRNEKVRQCRNH 126
            SL D+ R+W+ L+ELT+F+W FRFK+ AG+ WT  DPW+   K R+   H
Sbjct:    2 SLHDAIRSWITLEELTTFAWNFRFKELAGDVWTNDDPWWNGRKPRKVAFH 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129715.2168.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKJ8_ECTSI2.020e-6179.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LH86_9PHAE2.560e-6078.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0XJN4_9RHOD4.650e-1543.02Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S0C110_9STRA4.160e-850.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 19..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129715contigH-elongata_contig129715:226..603 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129715.2168.1mRNA_H-elongata_contig129715.2168.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig129715 226..603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig129715.2168.1 ID=prot_H-elongata_contig129715.2168.1|Name=mRNA_H-elongata_contig129715.2168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
TVLSLAQGLGLEFVPLGALHFLDGPDIARCGSVNRFLYKAAVNEGVWQAA
RDRLWEGKVHVPPSAKMMTPKAGYIASLQDSKRTWLGLDELTSFSWWFRF
KQQAGEAWTAQDPWYRNEKVRQCRNH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf