prot_H-elongata_contig129496.2156.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig129496.2156.1
Unique Nameprot_H-elongata_contig129496.2156.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length114
Homology
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.310e-60
Identity = 94/113 (83.19%), Postives = 104/113 (92.04%), Query Frame = 0
Query:    1 RLRSCRLRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQVAAIKLVLEEEQFGA 113
            RL     +L+YTPDTK+P+AGTFE+IKEDHTLGNLLRMQLLAD+QVRFAGY+QPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQE+EGLREVFQEQVAA K   E+EQFG+
Sbjct:   11 RLNDDEKKLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 123          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.050e-59
Identity = 93/106 (87.74%), Postives = 102/106 (96.23%), Query Frame = 0
Query:    8 RLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQVAAIKLVLEEEQFGA 113
            RL+YTPDTK+P+AGTFE+IKEDHTLGNLLRMQLLAD+QVRFAGY+QPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQE+EGLREVFQEQVAA K   E+EQFG+
Sbjct:   65 RLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQVAAAKHAAEQEQFGS 170          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.110e-37
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 0
Query:    1 RLRSCRLRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQVAAIKLVLEEEQF 111
            RL     ++ Y PDTK+PNAG F + KEDHTLGNL+RMQLL D+QVRFAGY+ PHPLEN + +KVQTNG+ TP+DALS A EDL+ E++ L + F E V A K + E  Q+
Sbjct:   11 RLNEGEEKVDYEPDTKIPNAGNFIIKKEDHTLGNLIRMQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 109 bits (272), Expect = 1.490e-28
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 0
Query:    8 RLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEIEGL 91
            ++ Y PDTKV NAGTF + KEDHT+GNLLRMQLL D QV+FAGY+ PHPL N+IH+KVQT+     P ++LSAA EDLS E + L
Sbjct:   19 KIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHL 103          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A6U1NZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NZH5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.660e-27
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 0
Query:    1 RLRSCRLRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEIEGLREVFQEQVAAIKLVLEEEQFGA 113
            RL     +L+Y PDTK+PNAGTF + +EDHTLGNLLRMQLL D  VRFAGY  PHPL + + +K+QT      P+ A+S + EDLS E + L + F+E +   K   ++ Q GA
Sbjct:   11 RLAEGEKKLTYEPDTKIPNAGTFTLNREDHTLGNLLRMQLLQDSSVRFAGYQHPHPLVHHLLVKIQTTDPPANPIQAMSTSIEDLSSEFDFLEQRFKEDIDRFK---QDRQSGA 121          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A7R9WNF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNF7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.980e-27
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 0
Query:    7 LRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEIEGLREVFQEQV 99
            +++ YT DTKV NAGTF++ KEDHT+GNL RMQLL D  VRFAGY  PHPL + +++K+QTN     PV+ LS+A EDLS E + L   FQE +
Sbjct:   19 VKIEYTADTKVTNAGTFKLNKEDHTVGNLFRMQLLRDPSVRFAGYYHPHPLVHFLNMKIQTNNSTVAPVEVLSSAIEDLSNETDHLTSQFQEAI 112          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A7R9U3J4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3J4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.130e-27
Identity = 49/96 (51.04%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    8 RLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQVAAIK 103
            +++Y  DTK+PNAGTF +++EDHTLGNLLRM+LL D+ VRFAGYI PHPLE+ I ++VQ   + TP+ +++ A + L Q+ + L + F+ QV   K
Sbjct:   20 KVTYQKDTKIPNAGTFTIMREDHTLGNLLRMELLKDQNVRFAGYIAPHPLEHVIKLRVQAADNVTPIRSVTQAVDHLQQQFDTLSKSFESQVHKFK 115          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A448ZBV9_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBV9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.100e-26
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 0
Query:    7 LRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNT-PVDALSAATEDLSQEIEGLREVFQE 97
            L++ YT DTKV NAGTF   KEDHT+GNL RMQLL D  VRFAGY+ PHPL   I +K+QTN     PV+ LSAA +DLS E + L   FQE
Sbjct:   19 LKIVYTADTKVTNAGTFRFNKEDHTVGNLFRMQLLRDPSVRFAGYLHPHPLVYFIDLKIQTNNSTVAPVEVLSAAIDDLSNETDHLMTQFQE 110          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A1I8A8U0_9BILA (RNA_pol_L_2 domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A8U0_9BILA)

HSP 1 Score: 102 bits (255), Expect = 4.500e-26
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 0
Query:    8 RLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQV 99
            ++++  DTKVPNA  F V+KEDHTLGNL++ QLL D QV FAGY  PHPL++KI I++QT  D TP DAL++A  DL  E+    E F++ V
Sbjct:   18 KITFEKDTKVPNAAIFTVLKEDHTLGNLIKHQLLKDPQVLFAGYRNPHPLDHKIVIRIQTTSDTTPADALTSAITDLLAELSLFEERFRDAV 109          
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Match: A0A0K0DYM0_STRER (RNA_pol_L_2 domain-containing protein n=5 Tax=Strongyloididae TaxID=6246 RepID=A0A0K0DYM0_STRER)

HSP 1 Score: 102 bits (255), Expect = 5.490e-26
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    8 RLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAGYIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQV 99
            ++S+  DTKVPNA  FE++KEDHTLGNLL+ QLL D  V FAGY  PHPLE+K H+++QT  D TP   L  A  DL  E+    + F+E V
Sbjct:   18 KISFEKDTKVPNAAIFEIVKEDHTLGNLLKHQLLKDPNVLFAGYRNPHPLEHKFHLRIQTTPDTTPTQVLLDAISDLIAELSMTEQYFKESV 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig129496.2156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST3_9PHAE2.310e-6083.19RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
D7G4D0_ECTSI1.050e-5987.74RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A836CIX8_9STRA1.110e-3758.56Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
K0SS38_THAOC1.490e-2863.53RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
A0A6U1NZH5_9STRA2.660e-2750.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9WNF7_9STRA3.980e-2756.38Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9U3J4_9STRA4.130e-2751.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A448ZBV9_9STRA1.100e-2659.78RNA_pol_L_2 domain-containing protein n=1 Tax=Pseu... [more]
A0A1I8A8U0_9BILA4.500e-2654.35RNA_pol_L_2 domain-containing protein n=1 Tax=Stei... [more]
A0A0K0DYM0_STRER5.490e-2653.26RNA_pol_L_2 domain-containing protein n=5 Tax=Stro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 8..108
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 8..108
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 2..110
e-value: 2.8E-37
score: 128.8
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 10..101
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 22..92
e-value: 5.1E-27
score: 93.5
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 25..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig129496contigH-elongata_contig129496:626..1472 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig129496.2156.1mRNA_H-elongata_contig129496.2156.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig129496 626..1472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig129496.2156.1 ID=prot_H-elongata_contig129496.2156.1|Name=mRNA_H-elongata_contig129496.2156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
RLRSCRLRLSYTPDTKVPNAGTFEVIKEDHTLGNLLRMQLLADKQVRFAG
YIQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEIEGLREVFQEQVA
AIKLVLEEEQFGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS