prot_H-elongata_contig128826.2122.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig128826.2122.1
Unique Name	prot_H-elongata_contig128826.2122.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	85

Homology

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BLAST of mRNA_H-elongata_contig128826.2122.1 vs. uniprot
Match: D8LS26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS26_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.480e-42
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0

Query:    1 MLLLEMTDFLWFMSGLLQMTTGVFSEKINTGVDRFGGAVFGIPNWGSRSVPDRWSAAKSKASEWSAWVEVMFGMILIAELILPRR 85
            M+LLE+TDFLWF+SGLLQM+ G F EK+N GVDRFGGA+FGIPNWGSRSV DRWSAAKSKASEW AW+EVMFGMIL+AEL+LPRR
Sbjct:  303 MVLLELTDFLWFLSGLLQMSPGAFFEKLNRGVDRFGGALFGIPNWGSRSVTDRWSAAKSKASEWGAWIEVMFGMILVAELLLPRR 387

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig128826.2122.1 vs. uniprot

BLAST of mRNA_H-elongata_contig128826.2122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LS26_ECTSI	4.480e-42	82.35	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..17
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 64..82
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..63
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 83..85
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..25 score: 0.587

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig128826	contig	H-elongata_contig128826:393..1687 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig128826.2122.1	mRNA_H-elongata_contig128826.2122.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig128826 393..1687 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig128826.2122.1 ID=prot_H-elongata_contig128826.2122.1|Name=mRNA_H-elongata_contig128826.2122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MLLLEMTDFLWFMSGLLQMTTGVFSEKINTGVDRFGGAVFGIPNWGSRSV
PDRWSAAKSKASEWSAWVEVMFGMILIAELILPRR