prot_H-elongata_contig12864.2106.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12864.2106.1
Unique Nameprot_H-elongata_contig12864.2106.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-10
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ+  W++A  K++ S + H V +L+P++SVPAG  V+GTRWV+++K D
Sbjct:  651 MNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTD 702          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JLG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.450e-9
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK   D
Sbjct:    1 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKNLD 52          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JY06_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY06_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.600e-9
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH VF LVP++SVP G K++ T++VFK K D
Sbjct:    1 MSSPQPEEWKGACSKEMVNLRKHNVFNLVPLSSVPKGEKILATKFVFKTKLD 52          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.400e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  574 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  349 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 400          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  574 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  574 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.410e-9
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            M  PQ   WK A  K++ +  KH V+ LVP++SVP G K++GT++VFK K D
Sbjct:  574 MSSPQREEWKGACSKEMDNLRKHNVYNLVPLSSVPKGEKILGTKFVFKKKLD 625          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-9
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0
Query:    1 MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            +  P+  + K A  K++ SR KH VF+LVPITSVP   KV+GTR+VFK KAD
Sbjct:  387 INSPETKQCKVAIGKELDSRAKHRVFKLVPITSVPKHEKVLGTRFVFKQKAD 438          
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Match: J0WMJ3_AURST (Reverse transcriptase (Fragment) n=1 Tax=Auricularia subglabra (strain TFB-10046 / SS5) TaxID=717982 RepID=J0WMJ3_AURST)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-8
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    4 PQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIKAD 52
            P A +W  A   ++ S + HGV+E VP++SVPAG +VVG RWVF +K D
Sbjct:   11 PYARQWLAAMGVELQSMDTHGVWEKVPLSSVPAGKQVVGCRWVFDLKHD 59          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12864.2106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE1.500e-1046.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLG1_9PHAE1.450e-946.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JY06_9PHAE2.600e-948.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K500_9PHAE3.400e-948.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE3.410e-948.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRJ1_9PHAE3.410e-948.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE3.410e-948.08Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE3.410e-948.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9R3_9PHAE4.660e-955.77Integrase catalytic domain-containing protein n=1 ... [more]
J0WMJ3_AURST1.370e-851.02Reverse transcriptase (Fragment) n=1 Tax=Auricular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12864contigH-elongata_contig12864:23..181 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12864.2106.1mRNA_H-elongata_contig12864.2106.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12864 23..202 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12864.2106.1 ID=prot_H-elongata_contig12864.2106.1|Name=mRNA_H-elongata_contig12864.2106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MGLPQAARWKEASDKDITSREKHGVFELVPITSVPAGHKVVGTRWVFKIK
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