prot_H-elongata_contig128631.2105.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128631.2105.1
Unique Nameprot_H-elongata_contig128631.2105.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length80
Homology
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.350e-31
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 75
            +VVPPFPDRPTEGFL FN EL PMA AS GE RNSP SVEIARVIEIGVRDSQALDTEALCI GGEKV  +R
Sbjct:   67 EVVPPFPDRPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLR 138          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.520e-27
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVR 72
            +VVPPFPDRP EGFL FN EL PMA AS GE RNSP SVEIARVIEIGVRDSQALDTEALCI GGEK+R
Sbjct:   67 EVVPPFPDRPMEGFLHFNVELGPMAAASMGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKLR 135          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.390e-21
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    4 SKVVPPFPDRPTEGFLFFNAELSPMADASF-GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 75
            ++VVPP+PDRPTEGFL FN ELSPMA   F   R SP +VEI R++E  +RD++A+DTEALCI  GEKV  +R
Sbjct:   60 AEVVPPYPDRPTEGFLMFNVELSPMASEKFEAGRPSPLAVEIGRIVERCLRDARAIDTEALCIVAGEKVWSLR 132          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.110e-20
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 0
Query:    4 SKVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYIR 75
            ++VVPP+PDRPT+G L FN ELS MA+AS G  R SP + EI R+IE G+RDSQALDTE LCI  GEKV  +R
Sbjct:   67 AEVVPPYPDRPTDGALMFNVELSKMAEASVGLLRASPLATEITRIIERGIRDSQALDTETLCIVAGEKVWQLR 139          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A2D4C8I4_PYTIN (Exosome complex exonuclease RRP45-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8I4_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 4.730e-19
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRPTEGFL FN ELSPMA  +F   R SP ++E+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPLAIELARIVDRGIRECRALDTEALAIVAGEKVWSI 140          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 4.820e-19
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRPTEGFL FN ELSPMA  +F   R SP +VE+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPMAVELARIVDRGIRECRALDTEALAIIAGEKVWAI 140          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A662Y5E3_9STRA (RNase_PH domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5E3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.020e-19
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRP+EGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   71 EIVPPFPDRPSEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 148          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: A0A8K1C7Y8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7Y8_PYTOL)

HSP 1 Score: 87.8 bits (216), Expect = 1.660e-18
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASFGE-RNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRPTEGFL F+ ELSPMA  +F   R SP +VE+AR+++ G+R+ +ALDTEAL I  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFSVELSPMASQNFEVGRPSPLAVELARIVDRGIRECRALDTEALAIVAGEKVWSI 140          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: W2QSC8_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QSC8_PHYPN)

HSP 1 Score: 86.7 bits (213), Expect = 4.030e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRPTEGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   12 EIVPPFPDRPTEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 89          
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Match: G4ZFL2_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZFL2_PHYSP)

HSP 1 Score: 86.7 bits (213), Expect = 4.450e-18
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    5 KVVPPFPDRPTEGFLFFNAELSPMADASF--------GERNSPASVEIARVIEIGVRDSQALDTEALCITGGEKVRYI 74
            ++VPPFPDRPTEGFL F  ELSPMA  SF        G  +S A+ E+AR++E GVR+S+ALDTEAL +  GEKV  I
Sbjct:   70 EIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAI 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128631.2105.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4N5_ECTSI4.350e-3183.333'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar... [more]
A0A6H5KDM4_9PHAE2.520e-2784.06RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1CIZ9_9STRA3.390e-2161.64Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZEC1_9STRA1.110e-2064.38Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A2D4C8I4_PYTIN4.730e-1960.56Exosome complex exonuclease RRP45-like protein n=1... [more]
K3X4Z2_GLOUD4.820e-1961.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662Y5E3_9STRA6.020e-1956.41RNase_PH domain-containing protein (Fragment) n=2 ... [more]
A0A8K1C7Y8_PYTOL1.660e-1860.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QSC8_PHYPN4.030e-1857.69Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
G4ZFL2_PHYSP4.450e-1857.69Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..75
e-value: 1.1E-14
score: 56.3
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 4..75
NoneNo IPR availablePANTHERPTHR11097:SF14EXOSOME COMPLEX COMPONENT RRP45coord: 4..75
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 5..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128631contigH-elongata_contig128631:810..1771 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128631.2105.1mRNA_H-elongata_contig128631.2105.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128631 810..1771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128631.2105.1 ID=prot_H-elongata_contig128631.2105.1|Name=mRNA_H-elongata_contig128631.2105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
SSRSKVVPPFPDRPTEGFLFFNAELSPMADASFGERNSPASVEIARVIEI
GVRDSQALDTEALCITGGEKVRYIRQGHP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold