prot_H-elongata_contig128532.2101.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128532.2101.1
Unique Nameprot_H-elongata_contig128532.2101.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JKV2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.250e-25
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++ED+EGAI++A H  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:    1 MCAGGAIAWFSKTQKCVTLSTTQAEYVAVADMGKEILFLRQVWRFMLPKELRPCIPLYEDHEGAIQIAIHPISNFNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREF 120          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.730e-25
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:  306 MCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREF 425          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.660e-25
Identity = 54/120 (45.00%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLR+V  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:  254 MCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLREVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDF 373          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.530e-25
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:  240 MCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPERDF 359          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.330e-25
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:  935 MCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREF 1054          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JFL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 8.460e-25
Identity = 54/120 (45.00%), Postives = 81/120 (67.50%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+W S+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D +HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct:    1 MCAGGAIAWLSKTQKCVNLSTTQAEYVAVADMGKEILFLRQVWCFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDARHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREF 120          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.210e-24
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTF 119
            M AGGAI+WFS+ QK    ++++++YVA+A+M  E+  LRQV  FM  + +   I +HEDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++  + F
Sbjct: 1654 MCAGGAIAWFSKTQKCVTLSTTQADYVAMADMGKEILLLRQVWRFMLPKELRPCIPLHEDNEGAIQVAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASKYQHADFLTKALPEREF 1773          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.980e-24
Identity = 49/118 (41.53%), Postives = 81/118 (68.64%), Query Frame = 0
Query:    4 GGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 120
            GGA+SWFSR QK    +++E+EYVAL ++V E+ FLRQ+  FM  ++ +  I + EDN+GAI++A++  S+  ++H+D++HH +R+ ++   + + +V S  Q AD LTKS+    FE
Sbjct:   84 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFE 201          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.700e-24
Identity = 54/115 (46.96%), Postives = 81/115 (70.43%), Query Frame = 0
Query:    1 MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSR-IDVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSV 114
            M AGGAI+WFS+ QK    +++++EYVA+A+M  E+ FLRQV  FM  + +   I ++EDNEGAI++AKH  S+  ++H+D++HH +R  +D   V I +V S  QHAD LTK++
Sbjct:  487 MCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601          
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.850e-24
Identity = 49/118 (41.53%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    4 GGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRIDVT-IKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYVRSGKQHADILTKSVDVKTFE 120
            GG++SWFSR QK    +++E+EYVAL ++V E+ FLRQ+  FM  ++ +  I I EDN+GAI++A++  S+  ++H+D++HH +R+ ++   + + +V S  Q AD LTKS+   +FE
Sbjct:  100 GGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFE 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128532.2101.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKV2_9PHAE1.250e-2544.17Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRZ9_9PHAE1.730e-2545.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWK8_9PHAE2.660e-2545.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JR13_9PHAE4.530e-2545.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KIL0_9PHAE6.330e-2545.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JFL1_9PHAE8.460e-2545.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Y0_9PHAE1.210e-2445.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUW6_9PHAE1.980e-2441.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K307_9PHAE2.700e-2446.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIJ7_9PHAE2.850e-2441.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..94
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 3..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128532contigH-elongata_contig128532:655..1014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128532.2101.1mRNA_H-elongata_contig128532.2101.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128532 655..1875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128532.2101.1 ID=prot_H-elongata_contig128532.2101.1|Name=mRNA_H-elongata_contig128532.2101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MMAGGAISWFSRVQKVTATASSESEYVALAEMVNELHFLRQVKEFMTSRI
DVTIKIHEDNEGAIKMAKHRFSSRLTRHVDIKHHIVRDAIDGWVVHIEYV
RSGKQHADILTKSVDVKTFE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like