prot_H-elongata_contig128439.2091.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128439.2091.1
Unique Nameprot_H-elongata_contig128439.2091.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: D8LIU5_ECTSI (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.170e-14
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            VERIGP+HQAGSDSLLTEQVFLKVADV+FNGV NLD+GK
Sbjct:  263 VERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDQGK 301          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A6H5JI77_9PHAE (Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI77_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.230e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            VERIGP+HQAGSDSLLTEQVFLKVADV+FNGV NLD GK
Sbjct:  266 VERIGPMHQAGSDSLLTEQVFLKVADVYFNGVANLDLGK 304          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A836C813_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C813_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            VERIG  HQAGSDSLLT QVF K+ D  FNG+ NL + K
Sbjct:  236 VERIGQKHQAGSDSLLTAQVFFKIVDTKFNGMSNLSREK 274          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A835Z498_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z498_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.930e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            VERIG  HQAGSDSLLT QVF K+ +  FNG+ NL + K
Sbjct:  239 VERIGQKHQAGSDSLLTAQVFFKIVETKFNGMSNLSREK 277          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A9SJM0_PHYPA (Poly(A)-specific ribonuclease n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SJM0_PHYPA)

HSP 1 Score: 49.7 bits (117), Expect = 7.970e-6
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 31
            VERIGP HQAGSDSLLT + F K+ D FFNG
Sbjct:  223 VERIGPCHQAGSDSLLTSRTFRKLKDGFFNG 253          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A9BKZ7_HEMAN (Poly(A)-specific ribonuclease n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BKZ7_HEMAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.120e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 31
            V RIGP+HQAGSDSLLT +VF K+ D FF G
Sbjct:  209 VSRIGPVHQAGSDSLLTLKVFFKLRDTFFKG 239          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: I0Z461_COCSC (Poly(A)-specific ribonuclease n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z461_COCSC)

HSP 1 Score: 48.9 bits (115), Expect = 1.540e-5
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDK 37
            VERIGP HQAGSDSLLT + F K+ D  FNG+  + K
Sbjct:  227 VERIGPQHQAGSDSLLTSKTFHKLIDTLFNGIDGVLK 263          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: A0A7S0YUJ2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUJ2_9CRYP)

HSP 1 Score: 48.1 bits (113), Expect = 1.760e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNG 31
            V RIGP+HQAGSD+LLT +VF K+ D FF G
Sbjct:  105 VSRIGPVHQAGSDALLTLKVFFKLRDAFFKG 135          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: K8YSH1_NANGC (Poly(A)-specific ribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSH1_NANGC)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            V R+GP+HQAGSDSLLT Q F ++  V F+G+ NL   K
Sbjct:  393 VARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEK 431          
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Match: W7TF71_9STRA (Poly(A)-specific ribonuclease n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF71_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0
Query:    1 VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK 39
            V R+GP+HQAGSDSLLT Q F ++  V F+G+ NL   K
Sbjct:  240 VARVGPMHQAGSDSLLTAQTFFRLCAVSFDGLNNLSDEK 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128439.2091.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LIU5_ECTSI1.170e-1489.74Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A6H5JI77_9PHAE3.230e-1489.74Poly(A)-specific ribonuclease n=1 Tax=Ectocarpus s... [more]
A0A836C813_9STRA1.980e-766.67Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A0A835Z498_9STRA6.930e-764.10Poly(A)-specific ribonuclease n=1 Tax=Tribonema mi... [more]
A9SJM0_PHYPA7.970e-674.19Poly(A)-specific ribonuclease n=2 Tax=Physcomitriu... [more]
A9BKZ7_HEMAN1.120e-570.97Poly(A)-specific ribonuclease n=1 Tax=Hemiselmis a... [more]
I0Z461_COCSC1.540e-562.16Poly(A)-specific ribonuclease n=2 Tax=Coccomyxa Ta... [more]
A0A7S0YUJ2_9CRYP1.760e-567.74Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
K8YSH1_NANGC2.180e-556.41Poly(A)-specific ribonuclease n=2 Tax=Monodopsidac... [more]
W7TF71_9STRA2.180e-556.41Poly(A)-specific ribonuclease n=1 Tax=Nannochlorop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..38
e-value: 1.9E-7
score: 32.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128439contigH-elongata_contig128439:1566..1869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128439.2091.1mRNA_H-elongata_contig128439.2091.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128439 1566..1869 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128439.2091.1 ID=prot_H-elongata_contig128439.2091.1|Name=mRNA_H-elongata_contig128439.2091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
VERIGPIHQAGSDSLLTEQVFLKVADVFFNGVGNLDKGK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf