prot_H-elongata_contig12835.2089.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12835.2089.1
Unique Nameprot_H-elongata_contig12835.2089.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length899
Homology
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BLAST of mRNA_H-elongata_contig12835.2089.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 9.710e-41
Identity = 106/178 (59.55%), Postives = 122/178 (68.54%), Query Frame = 0 
Query:    1 MDIGSNLEALDSGGWTPLHCACAAARASCVNALLQRGADPSALTPDGQRPPSLIATDLAEGDELNEETNQTILKMLRIPRVEFEARRRRHVAKHSGGMRXXXXXXXXXXXAYGPESAVGI--FDSGGSGSGTRSVSGSYSGEGSRQQNRSPTELKQQPPMGMGTGFGPSAKIIRRGGA 176
            +D+G ++E+ DSGGWTPLHCACAAARASCVN L+ RGADPSA+TP+G+R  SLI TDLAEGDE N ETN+TI KMLR+PR E EARRRR  AK++G  R       XXXXAYGP+S  GI  FDS GSGS T          GSRQ +RSPT   Q+ P G G       K  RRG A
Sbjct:  312 LDVGCDVESADSGGWTPLHCACAAARASCVNTLIMRGADPSAITPEGKRAASLIGTDLAEGDEPNSETNETIWKMLRVPRAESEARRRRRTAKNAGNQRPPPPYNDXXXXAYGPDSVGGIVVFDSAGSGSATXXXXXXXXXXGSRQLHRSPTH-PQEAPAGSG------GKGSRRGAA 482
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12835.2089.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI9.710e-4159.55Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 477..501
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 13..42
e-value: 2.3E-5
score: 33.8
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 14..44
e-value: 1.9E-5
score: 24.9
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 13..45
score: 10.659
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..84
e-value: 7.0E-11
score: 44.0
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 2..53
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..50
score: 14.239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12835contigH-elongata_contig12835:3703..7892 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12835.2089.1mRNA_H-elongata_contig12835.2089.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12835 1763..7909 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12835.2089.1 ID=prot_H-elongata_contig12835.2089.1|Name=mRNA_H-elongata_contig12835.2089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=899bp
MDIGSNLEALDSGGWTPLHCACAAARASCVNALLQRGADPSALTPDGQRP
PSLIATDLAEGDELNEETNQTILKMLRIPRVEFEARRRRHVAKHSGGMRP
PPPYNNRPPPAYGPESAVGIFDSGGSGSGTRSVSGSYSGEGSRQQNRSPT
ELKQQPPMGMGTGFGPSAKIIRRGGAANGPVTENIPSTDNRGLSRGHGSG
RVTPRGGETGGGFSNKSKRPSGEKGSDGAPKILSCSVGGGGGRGRRVVGG
GGGRGAPPCEERPAERTGERSTEPSAQRQGEEQGGAVDEAGRPVGYGYNA
ALERPPSHDNRASTGGVVAYPLRRSPKNESTGAGAAQPHEAQAKERPRSP
PDTTKKDPERPLSGGRSKSPPDSSGSGSKQVASSVVQQKPRSRSPPDAAG
NRTRAQSRPERVHKNLDQASSGSGSRSPPDGSGSRQRGAATAQQKPRSRS
PPDAASLKPAESRPRLPATEAAVKRIRARQQEQQQRERLELEQQHKEMKH
NMEAKSPKMQVDGAEVTPKVPISASKDEESTVRFAGDGSGGDNGGIGGEI
SSRNSEPKSEGIAVTPAKDVAEAGGWRVTANGGKHDASSGAAAGNPERPG
GEVAACRDKEKSDEDGKEGLPRLLSRPSASLRVAAAAAAAAAAAGGGVGG
TTGREATADMGGGRDKGGGGGVEEGGRDVSETVRGGGTAESSMLHDGRRS
SAGRVSGAFDSGISMDISSICSEDRSAGKGSDGVGSGIGNGGEAGGVETV
DGSGDASNGIGTGGAVGSGNGNGTGTESGGVQGGSVGVGRASRGLGSSNG
IGAGSGIGAVSSRSSGRRDVRLGSPTASINRIPSFRGIGNGTATASSSSS
SRPKIVTPKGLVAQRLAALDPFSYSQEDAASSARPAPPGKSKSFRARS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom