prot_H-elongata_contig128250.2080.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig128250.2080.1
Unique Nameprot_H-elongata_contig128250.2080.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length75
Homology
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: D8LL04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL04_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.280e-33
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0
Query:    1 LKGAAHKGFSAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 75
            LKGAAHKG +AM+T D++GDLVCGG SDGSCTVWS +T RE+ARLTGHQQKV AV+FC +G R+VTGSQDCSIKV
Sbjct:  293 LKGAAHKGMAAMITVDIHGDLVCGGASDGSCTVWSLRTSREQARLTGHQQKVCAVSFCDTGQRLVTGSQDCSIKV 367          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A5P6P248_9BRAD (CASPASE_P20 domain-containing protein n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6P248_9BRAD)

HSP 1 Score: 53.5 bits (127), Expect = 1.750e-6
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0
Query:    4 AAHKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 75
            A H+ +  SA  +AD    +  GGG D S  +W A + R  A  +GHQ+ V AVAF   GTR+++ S+D +IKV
Sbjct:  631 AGHRDYVVSASWSADSKRIVTGGGGRDKSVYLWDADSGRLLASFSGHQEDVEAVAFFPGGTRLISASEDKTIKV 704          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: UPI002012A5A2 (WD40 repeat domain-containing protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI002012A5A2)

HSP 1 Score: 52.0 bits (123), Expect = 5.940e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0
Query:    6 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 75
            H+ +  SA  +AD    +  GGG D S  +W A + R  A   GHQ+ + AVAF   GTR+++ S+D +IKV
Sbjct:  291 HRDYVVSASWSADSKRIVTGGGGRDKSVNLWDADSGRLLASFVGHQEDIEAVAFFPGGTRLISASEDKTIKV 362          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A2T2QBY6_9BRAD (CASPASE_P20 domain-containing protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2T2QBY6_9BRAD)

HSP 1 Score: 52.0 bits (123), Expect = 6.110e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0
Query:    6 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 75
            H+ +  SA  +AD    +  GGG D S  +W A + R  A   GHQ+ + AVAF   GTR+++ S+D +IKV
Sbjct:  619 HRDYVVSASWSADSKRIVTGGGGRDKSVNLWDADSGRLLASFAGHQEDIEAVAFFPGGTRLISASEDKTIKV 690          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A150UBW3_9BRAD (Uncharacterized protein (Fragment) n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A150UBW3_9BRAD)

HSP 1 Score: 51.6 bits (122), Expect = 8.160e-6
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 0
Query:    4 AAHKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQD 70
            A H+ +  SA  +AD    +  GGG D S  VW A + R  A   GHQ+ V AVAF   GTR+++ S+D
Sbjct:  320 AGHRDYVVSASWSADSKRIVTGGGGRDKSVNVWDADSGRLLASFAGHQEDVEAVAFFPGGTRLISASED 388          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: UPI001FF03970 (WD40 repeat domain-containing protein n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI001FF03970)

HSP 1 Score: 51.2 bits (121), Expect = 1.100e-5
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0
Query:    6 HKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQDCSIKV 75
            HK +  SA  +AD    +  GGG D S  +W A + R  A  TGH + V AVAF   GTR+++ S+D +I+V
Sbjct:  254 HKDYVVSASWSADGKRIVTGGGGRDKSVNLWDADSGRLLASFTGHLEDVEAVAFFPGGTRLISASEDRTIRV 325          
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Match: A0A2U8PP95_9BRAD (CASPASE_P20 domain-containing protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A2U8PP95_9BRAD)

HSP 1 Score: 50.4 bits (119), Expect = 2.140e-5
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0
Query:    4 AAHKGF--SAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQKVSAVAFCSSGTRIVTGSQD 70
            A H+ +  SA  +AD    +  GGG D S  +W A + R  A   GHQ+ V AVAF   GTR+++ S+D
Sbjct:  625 AGHRDYVVSASWSADSKRIVTGGGGRDKSVNLWDADSGRLLASFAGHQEDVEAVAFFPGGTRLISASED 693          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig128250.2080.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LL04_ECTSI2.280e-3377.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5P6P248_9BRAD1.750e-641.89CASPASE_P20 domain-containing protein n=5 Tax=Brad... [more]
UPI002012A5A25.940e-640.28WD40 repeat domain-containing protein n=3 Tax=Brad... [more]
A0A2T2QBY6_9BRAD6.110e-640.28CASPASE_P20 domain-containing protein n=2 Tax=Brad... [more]
A0A150UBW3_9BRAD8.160e-642.03Uncharacterized protein (Fragment) n=3 Tax=Bradyrh... [more]
UPI001FF039701.100e-541.67WD40 repeat domain-containing protein n=1 Tax=Brad... [more]
A0A2U8PP95_9BRAD2.140e-540.58CASPASE_P20 domain-containing protein n=2 Tax=Brad... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..75
e-value: 3.0E-15
score: 57.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 44..75
e-value: 2.6E-5
score: 24.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 45..75
score: 12.28
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 6..75
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 3..75
score: 15.188
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig128250contigH-elongata_contig128250:227..727 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig128250.2080.1mRNA_H-elongata_contig128250.2080.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig128250 227..727 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig128250.2080.1 ID=prot_H-elongata_contig128250.2080.1|Name=mRNA_H-elongata_contig128250.2080.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
LKGAAHKGFSAMVTADVYGDLVCGGGSDGSCTVWSAKTCREKARLTGHQQ
KVSAVAFCSSGTRIVTGSQDCSIKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf