prot_H-elongata_contig12813.2073.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig12813.2073.1
Unique Nameprot_H-elongata_contig12813.2073.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length218
Homology
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BLAST of mRNA_H-elongata_contig12813.2073.1 vs. uniprot
Match: D7FXA4_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.720e-5
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 0 
Query:    8 RKSCNRCSSKKERCDGHEPCQRCLRSGLECLYATCRTLGRPRNNASTTSNKRPPLGPCKPSDG 70
            RK+C+RC+SKK RCDG E C +C R G  C ++ CR  G PR++     +K   +GP  P DG
Sbjct:   79 RKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSG-PRDS---NGHKTGTIGPIIPRDG 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12813.2073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXA4_ECTSI5.720e-546.03Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 5..48
e-value: 2.5E-5
score: 33.7
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 9..39
e-value: 2.3E-7
score: 30.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 10..37
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 10..39
score: 10.469
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 6..39
e-value: 1.0E-7
score: 33.7
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 7..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12813contigH-elongata_contig12813:573..2741 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12813.2073.1mRNA_H-elongata_contig12813.2073.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig12813 573..2741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig12813.2073.1 ID=prot_H-elongata_contig12813.2073.1|Name=mRNA_H-elongata_contig12813.2073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
QARSGGRRKSCNRCSSKKERCDGHEPCQRCLRSGLECLYATCRTLGRPRN
NASTTSNKRPPLGPCKPSDGSGANLARKVTDAVAAAPDAGSLSGTSAGAG
ICTIASVTIAPAAHTEAAAGVASNEAAAASEDSKTLTIARIESRANVGDR
CPPGLEAARERGRRRIAEPLFMICDILTVLSKVPWSTKESAHRTRKQLRE
MRSLVAAEKTLLEEHRSA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf