prot_H-elongata_contig127967.2062.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig127967.2062.1
Unique Nameprot_H-elongata_contig127967.2062.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: D7FZ07_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ07_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.250e-26
Identity = 46/60 (76.67%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    8 AAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDEV 67
            A GGGKPL  KE KDFRGP GLFKKGDWTC ACGNVNWERR  CNKC N KPN+ +TDE 
Sbjct:   59 AGGGGKPLLKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLAATDEA 118          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: G4Z0Q3_PHYSP (RanBP2-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z0Q3_PHYSP)

HSP 1 Score: 82.4 bits (202), Expect = 8.010e-17
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    9 AGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            A G KP P K   DFRGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   DE
Sbjct:  236 ASGEKPKP-KGGADFRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSAKPGMAGLDE 292          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A6A3KYH4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KYH4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.200e-17
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   11 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            GG+   PK   DFRGP GLF+ GDW CN CGNVNWERR  CN C++ KP +   DE
Sbjct:   45 GGEKPKPKGGVDFRGPPGLFQPGDWACNTCGNVNWERRNECNMCKSSKPGMTGLDE 100          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A662WRN9_9STRA (RanBP2-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRN9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-16
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    4 SAGSAAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTD 65
            SAG A GG KP   K + DFRGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   D
Sbjct:  250 SAGGAGGGEKPKA-KGATDFRGPPGLFQAGDWTCNTCGNVNWERRNECNMCKSGKPTMSGLD 310          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A6A3Y7K4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y7K4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.140e-16
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   11 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            GG+   PK   DFRGP GLF+ GDW CN CGN+NWERR  CN C++ KP +   DE
Sbjct:   46 GGEKPKPKGGADFRGPPGLFQPGDWACNTCGNINWERRNECNMCKSSKPGMTGLDE 101          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: F0WQ51_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ51_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.640e-16
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   20 SKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            S DFRGP GLFK GDWTC  CGNVNWERRQ CN C+N KP +   DE
Sbjct:   62 SADFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGVDE 108          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A024GHB5_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHB5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.650e-16
Identity = 33/47 (70.21%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   20 SKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            S DFRGP GLFK GDWTC  CGNVNWERRQ CN C+N KP +   DE
Sbjct:   65 SADFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGADE 111          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A3M6V943_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V943_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.100e-15
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   11 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            GG    PKE  D RGP GLF+ GDWTC  CGN+NWERR  CN C++ KP +   DE
Sbjct:   80 GGDKSKPKEGTDLRGPPGLFQSGDWTCITCGNINWERRSECNMCKSSKPGMPGLDE 135          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: A0A0W8E0A8_PHYNI (Zinc finger Ran-binding domain-containing protein 2 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8E0A8_PHYNI)

HSP 1 Score: 79.0 bits (193), Expect = 1.440e-15
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   11 GGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            GG    PK   DFRGP GLF+ GDWTC  CGNVNWERR  CN C++ KP +   DE
Sbjct:  299 GGDKAKPKGGTDFRGPPGLFQPGDWTCITCGNVNWERRTECNMCKSSKPGMAGLDE 354          
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Match: H3HB99_PHYRM (RanBP2-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB99_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 1.820e-15
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   10 GGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQNCNKCQNVKPNIVSTDE 66
            GG KP P   S D RGP GLF+ GDWTCN CGNVNWERR  CN C++ KP +   DE
Sbjct:  293 GGEKPKP--TSADVRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSSKPGMSGLDE 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig127967.2062.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ07_ECTSI2.250e-2676.67RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
G4Z0Q3_PHYSP8.010e-1762.07RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]
A0A6A3KYH4_9STRA8.200e-1758.93Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A662WRN9_9STRA1.060e-1661.29RanBP2-type domain-containing protein n=1 Tax=Noth... [more]
A0A6A3Y7K4_9STRA1.140e-1657.14Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
F0WQ51_9STRA1.640e-1670.212-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A024GHB5_9STRA1.650e-1670.212-(3-amino-3-carboxypropyl)histidine synthase subu... [more]
A0A3M6V943_9STRA1.100e-1557.14Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0W8E0A8_PHYNI1.440e-1558.93Zinc finger Ran-binding domain-containing protein ... [more]
H3HB99_PHYRM1.820e-1561.40RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 33..57
e-value: 1.7E-5
score: 34.3
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 35..54
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 31..60
score: 9.958
NoneNo IPR availableGENE3D4.10.1060.10coord: 18..61
e-value: 2.0E-12
score: 48.1
NoneNo IPR availablePANTHERPTHR12999FAMILY NOT NAMEDcoord: 7..60
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 23..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig127967contigH-elongata_contig127967:448..651 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig127967.2062.1mRNA_H-elongata_contig127967.2062.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig127967 448..651 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig127967.2062.1 ID=prot_H-elongata_contig127967.2062.1|Name=mRNA_H-elongata_contig127967.2062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
GAPSAGSAAGGGKPLPPKESKDFRGPEGLFKKGDWTCNACGNVNWERRQN
CNKCQNVKPNIVSTDEVG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf