prot_H-elongata_contig12789.2056.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig12789.2056.1
Unique Name	prot_H-elongata_contig12789.2056.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	461

Homology

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.010e-73
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 0

Query:    1 QANDVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFAAAPGKVEASA---GGGAGL 133
            +ANDVGANLF+GQLDPDVDEKMLYDTFS FGFITQTPKVMRDPDTG+SKGYGFVSYDGFEASD AIECMHNQYLCNRQISVQYAYKK++RGERHGGQAERLLA+NNPSKFKVHTLF+ APGK+E SA   GG  G+
Sbjct:   93 KANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM 228

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 3.480e-72
Identity = 118/136 (86.76%), Postives = 127/136 (93.38%), Query Frame = 0

Query:    1 QANDVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFAAAPGKVEASA---GGGAGL 133
            +ANDVGANLF+GQLDPDVDEKMLYDTFS FGFITQTPKVMRDPDTG+SKGYGFVSYDGFEASD AIECMHNQYLCNRQISVQYAYKK++RGERHGGQAERLLA+NNPSKFKVHTLF+ APGK+E SA   GG  G+
Sbjct:   93 KANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM 228

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.680e-57
Identity = 94/124 (75.81%), Postives = 110/124 (88.71%), Query Frame = 0

Query:    1 QANDVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFAAAPGKVE 124
            +A DVGANLF+GQLDP+VDEK+LYDTFS FGFIT TPKVMRDP+TG SKGYGFVSYDGFEASD+AIECM+ Q+LCNRQI VQYA+K++S GERHG  AERLLAANNP + K HT+FA+  G+V+
Sbjct:   93 KAQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKVMRDPETGASKGYGFVSYDGFEASDLAIECMNGQFLCNRQIVVQYAFKRDSHGERHGSLAERLLAANNPLRLKPHTMFASQEGEVQ 216

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A0W8D7L6_PHYNI (Splicing factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D7L6_PHYNI)

HSP 1 Score: 187 bits (475), Expect = 1.270e-52
Identity = 87/122 (71.31%), Postives = 102/122 (83.61%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFA----AAPG 121
            DVGANLF+G LDP+VDEK+LYDTFS FG I +TPK+MRDPDT  SKG+GFVS+D FEA+D+AIECMH QYLCNRQ+ VQYA+KK+S  ERHG +AERLLA  NP+K K HT+FA    AAPG
Sbjct:   96 DVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDTKASKGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQRNPNKLKPHTMFAFTAGAAPG 217

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A6G0WNH8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNH8_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.630e-52
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFA 117
            D+GANLF+G LDPDVDEK+LYDTFS FG I +TPK+MRDPDT +S+G+GFVSYD FEA+D+AIECM+ QYLCNRQI VQYAYKK S  ERHG QAERLLA++NP+K K HT FA
Sbjct:   99 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKVSRGFGFVSYDSFEAADLAIECMNAQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKMKPHTRFA 212

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: F0YAQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 189 bits (479), Expect = 3.030e-52
Identity = 90/130 (69.23%), Postives = 106/130 (81.54%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFAAAPGKVEASAGGGAGL 133
            +VGANLFVG LD DVDEK+LYDTFS FG IT+TPK+MRDPDTG SKG+GFVSYD FEASD+AIECMHNQ+LCN+Q+ V YA+K++S+ ERHG QAERLLAANNP   K H +F   PG  +A  GG A +
Sbjct:   97 EVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSAKPHAMFGTGPG--DAMGGGYAAM 224

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A3F2RG69_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG69_9STRA)

HSP 1 Score: 185 bits (470), Expect = 8.260e-52
Identity = 84/114 (73.68%), Postives = 100/114 (87.72%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFA 117
            DVGANLF+G LDP+VDEK+LYDTFS FG I +TPKVMRDPDT +S+G+GFVS+D FEA+D+AIECM+ QYLCNRQ+ VQYAYKK+S+ ERHG +AERLLA  NP+K K HTLFA
Sbjct:   96 DVGANLFLGNLDPEVDEKLLYDTFSAFGGIIETPKVMRDPDTKLSRGFGFVSFDSFEAADLAIECMNGQYLCNRQVVVQYAYKKDSQNERHGSEAERLLAQRNPNKLKPHTLFA 209

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A6A4C3Q0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4C3Q0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.050e-51
Identity = 83/118 (70.34%), Postives = 100/118 (84.75%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFAAAPG 121
            DVGANLF+G LDP+VDEK+LYDTFS FG I +TPKVMRDPD+  S+G+GFVS+D FEA+D+AIECMH QYLCNRQ+ VQ+A+KK+SR ERHG +AERLLA  NP K + HT+FA  PG
Sbjct:   96 DVGANLFLGNLDPEVDEKLLYDTFSAFGGIVETPKVMRDPDSQASRGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQFAFKKDSRNERHGSEAERLLAQRNPDKLQPHTMFAFTPG 213

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: W4GDM5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4GDM5_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.100e-51
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFA 117
            D+GANLF+G LDPDVDEK+LYDTFS FG I +TPK+MRDPDT +S+G+GFVSYD FEA+D+AIECM+ QYLCNRQI VQYAYKK S  ERHG QAERLLA++NP+K K HT FA
Sbjct:   98 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKMSRGFGFVSYDSFEAADLAIECMNTQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKLKPHTRFA 211

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BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Match: A0A484EDR7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDR7_BRELC)

HSP 1 Score: 184 bits (467), Expect = 1.710e-51
Identity = 81/114 (71.05%), Postives = 98/114 (85.96%), Query Frame = 0

Query:    4 DVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKGYGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAERLLAANNPSKFKVHTLFA 117
            DVGANLF+G LDP+VDEK+LYDTFS FG I +TPK+MRDPD+  SKG+GF+S+D FEA+D+AIECMH QYLCNRQ+ VQYA+KK+S  ERHG +AERLLA  NP+K K HT+FA
Sbjct:   96 DVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDSKASKGFGFISFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQTNPNKLKPHTMFA 209

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12789.2056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KI11_9PHAE	1.010e-73	86.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LT41_ECTSI	3.480e-72	86.76	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YPU5_9STRA	4.680e-57	75.81	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A0W8D7L6_PHYNI	1.270e-52	71.31	Splicing factor 3B subunit 4 n=11 Tax=Peronosporac...	[more]
A0A6G0WNH8_9STRA	2.630e-52	74.56	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
F0YAQ8_AURAN	3.030e-52	69.23	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A3F2RG69_9STRA	8.260e-52	73.68	Uncharacterized protein n=3 Tax=Phytophthora kerno...	[more]
A0A6A4C3Q0_9STRA	1.050e-51	70.34	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]
W4GDM5_9STRA	1.100e-51	74.56	Uncharacterized protein n=6 Tax=Aphanomyces TaxID=...	[more]
A0A484EDR7_BRELC	1.710e-51	71.05	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..82 e-value: 1.6E-20 score: 84.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..79 e-value: 1.4E-15 score: 56.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..86 score: 15.153
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..100 e-value: 2.0E-22 score: 81.6
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..205
None	No IPR available	PANTHER	PTHR15241:SF183	SPLICING FACTOR 3B SUBUNIT 4	coord: 8..205
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..97

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12789	contig	H-elongata_contig12789:77..8414 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12789.2056.1	mRNA_H-elongata_contig12789.2056.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig12789 77..8414 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig12789.2056.1 ID=prot_H-elongata_contig12789.2056.1|Name=mRNA_H-elongata_contig12789.2056.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=461bp
QANDVGANLFVGQLDPDVDEKMLYDTFSGFGFITQTPKVMRDPDTGISKG
YGFVSYDGFEASDMAIECMHNQYLCNRQISVQYAYKKESRGERHGGQAER
LLAANNPSKFKVHTLFAAAPGKVEASAGGGAGLAPAAPSSPPPPSRPPGS
VPPLPPGMPPPPPPPPTPGMPPLPPSSTQPNTPRQWSSGGGPPPPPQGGM
MPQGMRPPPPPGYGGGGGGFSPHMLPPHQHQHQHMMHGGGFRHGMNTRNG
GGGGGRRPQMMGGMPPPPPPPSMNNMGRPPPLPPAGRNPQQSMPPPPPPP
PPLPLSASPSANGGPAGQHRQGANHPPPPPPPTVGQNDLVGGGGNISTMP
LPPPPPVSVPLPPGGLGSGPGSNRPGMPPPPPPPMGRGGSGGGNMGTANR
ERGPGGGMLPPPPPPHQQQQGMGGPPLFQQQQQERAMGRGPPPMLMPLPP
GRGNGPDNAQQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf