prot_H-elongata_contig12772.2043.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig12772.2043.1
Unique Name	prot_H-elongata_contig12772.2043.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	707

Homology

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BLAST of mRNA_H-elongata_contig12772.2043.1 vs. uniprot
Match: D7G2X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X1_ECTSI)

HSP 1 Score: 419 bits (1078), Expect = 1.750e-124
Identity = 256/572 (44.76%), Postives = 329/572 (57.52%), Query Frame = 0

Query:    3 RCWEGWVSFSSRRKRTRALMKKVEKHIRLLRAGTMMGKMKAIARDSKIMTAFAVSKLLLAQTLVGGRILSYIATERSAEVFALMAWQAWKRLVAKRHRWVWLLYQHTKTEALQTKHAILRSWSLVT-RRQRPGGANLTLSASLPFSTWDRFVQSYVDRGITPQNELLKDMVNHSVIQQNTSSWVLS-DSPNVNSRYSKTAA--------SHEPSVNGSRHEYMELKLRGSKTCSSGSSSGCSARTRLDKLMTKSRPKEKVVPITDWRTLNPALFKAIDECDTVGVSNLLRRGANVNAIFVPPNGI---SGGALKEGGMLEGKEEVKGSA----LGLEDSLDLLAPMLIPLSDGTFEIRGTTPLHLASCHFSADFLPIVIMLLHAGALVDALDSTGKTPLQLCTRQPTAIFSSPQTAALLHNHARRLHAFKFSSSELRWGQKVLTTEYHAVGGAALWRYITSVAIFARLNTLNDILCAEDKRTEKTQKQAQNICTPCLSARVTQKDKLPGSFFAKSGSQGNEGRADKGGGDGILDESEKELIRMKIDILHGAKMIVEGEHALN-GGENAAGAS 556
            RCW+GW  F+S RK ++ L KK  +HIRLLR G++M  + A ARD KI+++F VSKLLL     G   L Y+AT +  ++F+L+AWQAWK+   +R RW WLLY+HTK EA   + ++ R+WS  T RR RP  A+LTLSA+LPFSTWDR +++YVD+G+ P  +L KD+V+HSV+QQNT+ W+L  DS     R S +AA          +PS  G     MEL   G+         G   R RL +      P        DWRTL PALF A+D+CD   V +LL RGA VN ++VPP       GG  K    +  ++   G +    LG+   LDL  P LI  SDGTF++RGTTPLH A+ HFS D+  IV+ LLHAGA V ALD+ GKTPLQ+CT        SPQ AA+L  HA RL   KFS  ELRWGQ++LT+E H  G   LWRY+   A+ ARL+ L+  L AED R E    +A +                     A   S G    +    G   LDE EKELIRMK++ L   K IV+ EH L+ GG  A G S
Sbjct:  514 RCWQGWKRFTSSRKISKMLKKKTVEHIRLLRTGSVMSDVTAYARDGKILSSFTVSKLLLTTKFFGAMALGYVATGQITQLFSLLAWQAWKQYTVRRRRWKWLLYEHTKAEAFHARQSVFRAWSYATGRRYRPDAASLTLSAALPFSTWDRLLKNYVDQGVIPMEQLHKDLVDHSVMQQNTAWWLLGQDSAERPIRDSSSAAVLSGLGTSEEDPSRGGESR--MELPKSGA--------GGGGVRGRLSRHGVSEGPAA-----VDWRTLAPALFVAVDDCDEAEVMDLLHRGAQVNCVYVPPESAPLSDGGVSKRSRGITKQDRNGGESGSGILGVGRILDLPPPALIAQSDGTFQMRGTTPLHAAAGHFSGDYTSIVVALLHAGASVGALDAAGKTPLQVCT--------SPQIAAVLSEHANRLQPHKFSPQELRWGQQILTSERHGCGATGLWRYVVRAAVVARLDKLSAALRAEDTRAEDDSSEATHQXXXXXXXXXXX---XXXXGMAAGNSFGTTNASTGAAGATGLDEREKELIRMKMENLEATKTIVDREHVLHSGGTGAPGGS 1059

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig12772.2043.1 vs. uniprot

BLAST of mRNA_H-elongata_contig12772.2043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G2X1_ECTSI	1.750e-124	44.76	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 379..413 e-value: 3300.0 score: 1.2 coord: 343..375 e-value: 0.72 score: 18.9 coord: 260..289 e-value: 210.0 score: 10.0
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 343..378 score: 11.06
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 63..67
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 68..706
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..67
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 52..62
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..51
IPR020683	Ankyrin repeat-containing domain	PROSITE	PS50297	ANK_REP_REGION	coord: 343..386 score: 13.575
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 263..390

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig12772	contig	H-elongata_contig12772:2256..7760 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig12772.2043.1	mRNA_H-elongata_contig12772.2043.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig12772 1172..7844 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig12772.2043.1 ID=prot_H-elongata_contig12772.2043.1|Name=mRNA_H-elongata_contig12772.2043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=707bp
MARCWEGWVSFSSRRKRTRALMKKVEKHIRLLRAGTMMGKMKAIARDSKI
MTAFAVSKLLLAQTLVGGRILSYIATERSAEVFALMAWQAWKRLVAKRHR
WVWLLYQHTKTEALQTKHAILRSWSLVTRRQRPGGANLTLSASLPFSTWD
RFVQSYVDRGITPQNELLKDMVNHSVIQQNTSSWVLSDSPNVNSRYSKTA
ASHEPSVNGSRHEYMELKLRGSKTCSSGSSSGCSARTRLDKLMTKSRPKE
KVVPITDWRTLNPALFKAIDECDTVGVSNLLRRGANVNAIFVPPNGISGG
ALKEGGMLEGKEEVKGSALGLEDSLDLLAPMLIPLSDGTFEIRGTTPLHL
ASCHFSADFLPIVIMLLHAGALVDALDSTGKTPLQLCTRQPTAIFSSPQT
AALLHNHARRLHAFKFSSSELRWGQKVLTTEYHAVGGAALWRYITSVAIF
ARLNTLNDILCAEDKRTEKTQKQAQNICTPCLSARVTQKDKLPGSFFAKS
GSQGNEGRADKGGGDGILDESEKELIRMKIDILHGAKMIVEGEHALNGGE
NAAGASGERRSSNHLSYYPRRGSLAACRSPMITTSAFARVRSTRLTRSGK
HSCAVGWRQWLGSGSFEALSAEKACSTAHNAPVIPTIVWFATRKNYPISC
WRFSKEWRVRSTELRHQGVKKAGGALAVVYRPHPYSTTCPIVESTKAARI
SSTWQR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR020683	Ankyrin_rpt-contain_dom
IPR036770	Ankyrin_rpt-contain_sf